(29 nodes) Pentose and glucuronate interconversions network (Citrus clementina)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	V4RZI4_9ROSI	Uncharacterized protein. (406 aa)
	V4S4A9_9ROSI	Pectate lyase. (438 aa)
	V4S4B8_9ROSI	Pectate lyase. (383 aa)
	V4S7W5_9ROSI	Pectinesterase. (343 aa)
	V4SCF2_9ROSI	Pectinesterase. (362 aa)
	V4SMC0_9ROSI	Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin. In the C-terminal section; belongs to the pectinesterase family. (584 aa)
	V4SNJ3_9ROSI	Uncharacterized protein. (400 aa)
	V4SPP8_9ROSI	Pectate lyase. (491 aa)
	V4STK3_9ROSI	Uncharacterized protein. (390 aa)
	V4T4I5_9ROSI	Pectinesterase. (316 aa)
	V4T7D5_9ROSI	PMEI domain-containing protein; In the C-terminal section; belongs to the pectinesterase family. (573 aa)
	V4TAK0_9ROSI	Pectinesterase. (370 aa)
	V4TAT8_9ROSI	PMEI domain-containing protein; In the C-terminal section; belongs to the pectinesterase family. (727 aa)
	V4TAU2_9ROSI	Pectinesterase; In the C-terminal section; belongs to the pectinesterase family. (571 aa)
	V4TBW5_9ROSI	Pectinesterase. (368 aa)
	V4TCS5_9ROSI	Pectate lyase. (331 aa)
	V4TL25_9ROSI	Uncharacterized protein. (418 aa)
	V4TMV0_9ROSI	Amb_all domain-containing protein. (234 aa)
	V4TNK2_9ROSI	Pectate lyase. (469 aa)
	V4TVV6_9ROSI	Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin. In the C-terminal section; belongs to the pectinesterase family. (550 aa)
	V4TY59_9ROSI	Uncharacterized protein. (388 aa)
	V4TYZ2_9ROSI	Pectinesterase. (359 aa)
	V4TZ16_9ROSI	Pectate lyase. (390 aa)
	V4UJ35_9ROSI	Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin. In the C-terminal section; belongs to the pectinesterase family. (556 aa)
	V4UJ53_9ROSI	Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin. In the C-terminal section; belongs to the pectinesterase family. (525 aa)
	V4UM50_9ROSI	Uncharacterized protein; Belongs to the glycosyl hydrolase 28 family. (415 aa)
	V4UQA6_9ROSI	Pectate lyase. (477 aa)
	V4VJL1_9ROSI	Pectate lyase. (437 aa)
	V4WBG6_9ROSI	Uncharacterized protein. (419 aa)

Your Current Organism:

Citrus clementina

NCBI taxonomy Id: 85681
Other names: C. clementina, Citrus deliciosa x Citrus sinensis, clementine

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4RZI4_9ROSI	V4S4A9_9ROSI	V4RZI4	V4S4A9	Uncharacterized protein.	Pectate lyase.	0.673
V4RZI4_9ROSI	V4S4B8_9ROSI	V4RZI4	V4S4B8	Uncharacterized protein.	Pectate lyase.	0.737
V4RZI4_9ROSI	V4S7W5_9ROSI	V4RZI4	V4S7W5	Uncharacterized protein.	Pectinesterase.	0.742
V4RZI4_9ROSI	V4SCF2_9ROSI	V4RZI4	V4SCF2	Uncharacterized protein.	Pectinesterase.	0.743
V4RZI4_9ROSI	V4SMC0_9ROSI	V4RZI4	V4SMC0	Uncharacterized protein.	Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin. In the C-terminal section; belongs to the pectinesterase family.	0.722
V4RZI4_9ROSI	V4SPP8_9ROSI	V4RZI4	V4SPP8	Uncharacterized protein.	Pectate lyase.	0.712
V4RZI4_9ROSI	V4T4I5_9ROSI	V4RZI4	V4T4I5	Uncharacterized protein.	Pectinesterase.	0.756
V4RZI4_9ROSI	V4T7D5_9ROSI	V4RZI4	V4T7D5	Uncharacterized protein.	PMEI domain-containing protein; In the C-terminal section; belongs to the pectinesterase family.	0.732
V4RZI4_9ROSI	V4TAK0_9ROSI	V4RZI4	V4TAK0	Uncharacterized protein.	Pectinesterase.	0.750
V4RZI4_9ROSI	V4TAT8_9ROSI	V4RZI4	V4TAT8	Uncharacterized protein.	PMEI domain-containing protein; In the C-terminal section; belongs to the pectinesterase family.	0.763
V4RZI4_9ROSI	V4TAU2_9ROSI	V4RZI4	V4TAU2	Uncharacterized protein.	Pectinesterase; In the C-terminal section; belongs to the pectinesterase family.	0.749
V4RZI4_9ROSI	V4TBW5_9ROSI	V4RZI4	V4TBW5	Uncharacterized protein.	Pectinesterase.	0.765
V4RZI4_9ROSI	V4TCS5_9ROSI	V4RZI4	V4TCS5	Uncharacterized protein.	Pectate lyase.	0.737
V4RZI4_9ROSI	V4TMV0_9ROSI	V4RZI4	V4TMV0	Uncharacterized protein.	Amb_all domain-containing protein.	0.764
V4RZI4_9ROSI	V4TNK2_9ROSI	V4RZI4	V4TNK2	Uncharacterized protein.	Pectate lyase.	0.730
V4RZI4_9ROSI	V4TVV6_9ROSI	V4RZI4	V4TVV6	Uncharacterized protein.	Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin. In the C-terminal section; belongs to the pectinesterase family.	0.747
V4RZI4_9ROSI	V4TY59_9ROSI	V4RZI4	V4TY59	Uncharacterized protein.	Uncharacterized protein.	0.730
V4RZI4_9ROSI	V4TYZ2_9ROSI	V4RZI4	V4TYZ2	Uncharacterized protein.	Pectinesterase.	0.760
V4RZI4_9ROSI	V4TZ16_9ROSI	V4RZI4	V4TZ16	Uncharacterized protein.	Pectate lyase.	0.650
V4RZI4_9ROSI	V4UJ35_9ROSI	V4RZI4	V4UJ35	Uncharacterized protein.	Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin. In the C-terminal section; belongs to the pectinesterase family.	0.749