41 items (Citrus clementina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	V4RIK4_9ROSI	AAA domain-containing protein. (481 aa)
	V4RLS3_9ROSI	Uncharacterized protein. (120 aa)
	V4RRA1_9ROSI	PCNA_C domain-containing protein. (113 aa)
	V4RVR7_9ROSI	Uncharacterized protein. (767 aa)
	V4S164_9ROSI	Protein kinase domain-containing protein. (256 aa)
	V4S6M2_9ROSI	DNA_pol_E_B domain-containing protein. (209 aa)
	V4S8J3_9ROSI	Uncharacterized protein. (583 aa)
	V4SB24_9ROSI	Uncharacterized protein. (658 aa)
	V4SB31_9ROSI	UmuC domain-containing protein. (677 aa)
	V4SCI8_9ROSI	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (266 aa)
	V4SDP5_9ROSI	Uncharacterized protein. (594 aa)
	V4SEQ3_9ROSI	Replication factor C subunit 1. (958 aa)
	V4SF43_9ROSI	CBFD_NFYB_HMF domain-containing protein. (143 aa)
	V4SFA7_9ROSI	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2206 aa)
	V4SGM4_9ROSI	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (1041 aa)
	V4SQ01_9ROSI	DNA polymerase. (1513 aa)
	V4SV79_9ROSI	Protein kinase domain-containing protein. (289 aa)
	V4SXG4_9ROSI	DNA primase; Belongs to the eukaryotic-type primase small subunit family. (451 aa)
	V4T0N8_9ROSI	Uncharacterized protein; Belongs to the rad9 family. (450 aa)
	V4T1L9_9ROSI	Uncharacterized protein. (1434 aa)
	V4T2P9_9ROSI	AAA domain-containing protein. (1204 aa)
	V4T2V7_9ROSI	AAA domain-containing protein. (364 aa)
	V4T327_9ROSI	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (528 aa)
	V4T751_9ROSI	DNA polymerase. (1123 aa)
	V4TCV9_9ROSI	AAA domain-containing protein. (382 aa)
	V4TEH1_9ROSI	Uncharacterized protein. (352 aa)
	V4TEJ0_9ROSI	Uncharacterized protein. (742 aa)
	V4TIA0_9ROSI	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (620 aa)
	V4TIQ4_9ROSI	DNA_pol3_gamma3 domain-containing protein. (862 aa)
	V4TN43_9ROSI	Uncharacterized protein. (453 aa)
	V4TQJ3_9ROSI	DNA_pol3_gamma3 domain-containing protein. (1199 aa)
	V4TRG2_9ROSI	HORMA domain-containing protein. (204 aa)
	V4TXU7_9ROSI	Uncharacterized protein. (621 aa)
	V4TYR3_9ROSI	Uncharacterized protein. (955 aa)
	V4U3R4_9ROSI	Uncharacterized protein. (374 aa)
	V4U969_9ROSI	Uncharacterized protein. (397 aa)
	V4UYZ0_9ROSI	AAA domain-containing protein. (1268 aa)
	V4V3U9_9ROSI	DNA polymerase. (1741 aa)
	V4VLY3_9ROSI	AAA domain-containing protein. (331 aa)
	V4VU62_9ROSI	AAA domain-containing protein. (354 aa)
	V4W6U5_9ROSI	UmuC domain-containing protein. (732 aa)

Your Current Organism:

Citrus clementina

NCBI taxonomy Id: 85681
Other names: C. clementina, Citrus deliciosa x Citrus sinensis, clementine

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4RIK4_9ROSI	V4RLS3_9ROSI	V4RIK4	V4RLS3	AAA domain-containing protein.	Uncharacterized protein.	0.984
V4RIK4_9ROSI	V4RRA1_9ROSI	V4RIK4	V4RRA1	AAA domain-containing protein.	PCNA_C domain-containing protein.	0.868
V4RIK4_9ROSI	V4RVR7_9ROSI	V4RIK4	V4RVR7	AAA domain-containing protein.	Uncharacterized protein.	0.919
V4RIK4_9ROSI	V4S164_9ROSI	V4RIK4	V4S164	AAA domain-containing protein.	Protein kinase domain-containing protein.	0.878
V4RIK4_9ROSI	V4S6M2_9ROSI	V4RIK4	V4S6M2	AAA domain-containing protein.	DNA_pol_E_B domain-containing protein.	0.523
V4RIK4_9ROSI	V4S8J3_9ROSI	V4RIK4	V4S8J3	AAA domain-containing protein.	Uncharacterized protein.	0.503
V4RIK4_9ROSI	V4SCI8_9ROSI	V4RIK4	V4SCI8	AAA domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.868
V4RIK4_9ROSI	V4SDP5_9ROSI	V4RIK4	V4SDP5	AAA domain-containing protein.	Uncharacterized protein.	0.874
V4RIK4_9ROSI	V4SEQ3_9ROSI	V4RIK4	V4SEQ3	AAA domain-containing protein.	Replication factor C subunit 1.	0.795
V4RIK4_9ROSI	V4SFA7_9ROSI	V4RIK4	V4SFA7	AAA domain-containing protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.971
V4RIK4_9ROSI	V4SQ01_9ROSI	V4RIK4	V4SQ01	AAA domain-containing protein.	DNA polymerase.	0.963
V4RIK4_9ROSI	V4SV79_9ROSI	V4RIK4	V4SV79	AAA domain-containing protein.	Protein kinase domain-containing protein.	0.878
V4RIK4_9ROSI	V4SXG4_9ROSI	V4RIK4	V4SXG4	AAA domain-containing protein.	DNA primase; Belongs to the eukaryotic-type primase small subunit family.	0.665
V4RIK4_9ROSI	V4T1L9_9ROSI	V4RIK4	V4T1L9	AAA domain-containing protein.	Uncharacterized protein.	0.893
V4RIK4_9ROSI	V4T2P9_9ROSI	V4RIK4	V4T2P9	AAA domain-containing protein.	AAA domain-containing protein.	0.774
V4RIK4_9ROSI	V4T2V7_9ROSI	V4RIK4	V4T2V7	AAA domain-containing protein.	AAA domain-containing protein.	0.983
V4RIK4_9ROSI	V4T327_9ROSI	V4RIK4	V4T327	AAA domain-containing protein.	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	0.936
V4RIK4_9ROSI	V4T751_9ROSI	V4RIK4	V4T751	AAA domain-containing protein.	DNA polymerase.	0.878
V4RIK4_9ROSI	V4TCV9_9ROSI	V4RIK4	V4TCV9	AAA domain-containing protein.	AAA domain-containing protein.	0.893
V4RIK4_9ROSI	V4TEJ0_9ROSI	V4RIK4	V4TEJ0	AAA domain-containing protein.	Uncharacterized protein.	0.919