19 items (Citrus clementina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	V4S414_9ROSI	Uncharacterized protein. (434 aa)
	V4S4F1_9ROSI	WD_REPEATS_REGION domain-containing protein. (768 aa)
	V4SAX6_9ROSI	Uncharacterized protein. (786 aa)
	V4SC27_9ROSI	Uncharacterized protein. (462 aa)
	V4SK61_9ROSI	WD_REPEATS_REGION domain-containing protein. (667 aa)
	V4SNC9_9ROSI	WD_REPEATS_REGION domain-containing protein. (350 aa)
	V4SPX6_9ROSI	Uncharacterized protein. (262 aa)
	V4T2H5_9ROSI	WD_REPEATS_REGION domain-containing protein. (701 aa)
	V4T9F7_9ROSI	WD_REPEATS_REGION domain-containing protein. (799 aa)
	V4TIG7_9ROSI	WD_REPEATS_REGION domain-containing protein. (437 aa)
	V4TIP6_9ROSI	WD_REPEATS_REGION domain-containing protein. (367 aa)
	V4TMR9_9ROSI	WD_REPEATS_REGION domain-containing protein. (395 aa)
	V4TPI2_9ROSI	Uncharacterized protein. (454 aa)
	V4TRI4_9ROSI	WD_REPEATS_REGION domain-containing protein. (525 aa)
	V4TTQ7_9ROSI	Uncharacterized protein. (784 aa)
	V4UCY1_9ROSI	WD_REPEATS_REGION domain-containing protein. (458 aa)
	V4UE11_9ROSI	Uncharacterized protein. (837 aa)
	V4UMH4_9ROSI	Uncharacterized protein. (1095 aa)
	V4UPA0_9ROSI	WD_REPEATS_REGION domain-containing protein. (349 aa)

Your Current Organism:

Citrus clementina

NCBI taxonomy Id: 85681
Other names: C. clementina, Citrus deliciosa x Citrus sinensis, clementine

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4S414_9ROSI	V4S4F1_9ROSI	V4S414	V4S4F1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.471
V4S414_9ROSI	V4SAX6_9ROSI	V4S414	V4SAX6	Uncharacterized protein.	Uncharacterized protein.	0.529
V4S414_9ROSI	V4SK61_9ROSI	V4S414	V4SK61	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.420
V4S414_9ROSI	V4SNC9_9ROSI	V4S414	V4SNC9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.464
V4S414_9ROSI	V4SPX6_9ROSI	V4S414	V4SPX6	Uncharacterized protein.	Uncharacterized protein.	0.504
V4S414_9ROSI	V4T2H5_9ROSI	V4S414	V4T2H5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.458
V4S414_9ROSI	V4T9F7_9ROSI	V4S414	V4T9F7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.507
V4S414_9ROSI	V4TIP6_9ROSI	V4S414	V4TIP6	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.518
V4S414_9ROSI	V4TRI4_9ROSI	V4S414	V4TRI4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.490
V4S414_9ROSI	V4TTQ7_9ROSI	V4S414	V4TTQ7	Uncharacterized protein.	Uncharacterized protein.	0.530
V4S414_9ROSI	V4UE11_9ROSI	V4S414	V4UE11	Uncharacterized protein.	Uncharacterized protein.	0.526
V4S414_9ROSI	V4UMH4_9ROSI	V4S414	V4UMH4	Uncharacterized protein.	Uncharacterized protein.	0.466
V4S414_9ROSI	V4UPA0_9ROSI	V4S414	V4UPA0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.461
V4S4F1_9ROSI	V4S414_9ROSI	V4S4F1	V4S414	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.471
V4S4F1_9ROSI	V4SC27_9ROSI	V4S4F1	V4SC27	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.480
V4S4F1_9ROSI	V4T2H5_9ROSI	V4S4F1	V4T2H5	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.401
V4S4F1_9ROSI	V4TIP6_9ROSI	V4S4F1	V4TIP6	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.411
V4S4F1_9ROSI	V4TMR9_9ROSI	V4S4F1	V4TMR9	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.416
V4S4F1_9ROSI	V4TPI2_9ROSI	V4S4F1	V4TPI2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.410
V4S4F1_9ROSI	V4TRI4_9ROSI	V4S4F1	V4TRI4	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.401