(44 nodes) Mixed, incl. rRNA binding, and Organellar large ribosomal subunit network (Citrus clementina)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	V4RMK3_9ROSI	Uncharacterized protein. (106 aa)
	V4RN77_9ROSI	Uncharacterized protein. (536 aa)
	V4RTD8_9ROSI	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family. (142 aa)
	V4RUQ3_9ROSI	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (125 aa)
	V4RUW5_9ROSI	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (155 aa)
	V4RXM0_9ROSI	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (331 aa)
	V4S186_9ROSI	Ribosomal_L18e/L15P domain-containing protein. (280 aa)
	V4S2N4_9ROSI	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (201 aa)
	V4S625_9ROSI	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family. (218 aa)
	V4S8S2_9ROSI	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (363 aa)
	V4SJP9_9ROSI	Ribosomal_TL5_C domain-containing protein. (241 aa)
	V4SKH7_9ROSI	Uncharacterized protein. (153 aa)
	V4SR92_9ROSI	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (207 aa)
	V4SRV8_9ROSI	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (275 aa)
	V4SSU6_9ROSI	Uncharacterized protein; Belongs to the universal ribosomal protein uS17 family. (157 aa)
	V4SXS2_9ROSI	Ribosomal_TL5_C domain-containing protein. (258 aa)
	V4T176_9ROSI	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (173 aa)
	V4T1A8_9ROSI	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (270 aa)
	V4T7I1_9ROSI	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family. (153 aa)
	V4TA42_9ROSI	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (155 aa)
	V4TD26_9ROSI	Uncharacterized protein. (267 aa)
	V4TF33_9ROSI	Uncharacterized protein. (173 aa)
	V4TK23_9ROSI	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family. (225 aa)
	V4TMT5_9ROSI	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family. (245 aa)
	V4TNF2_9ROSI	Uncharacterized protein. (243 aa)
	V4TQQ2_9ROSI	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (369 aa)
	V4TU53_9ROSI	Uncharacterized protein. (236 aa)
	V4TUH6_9ROSI	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (101 aa)
	V4TUX9_9ROSI	RF_PROK_I domain-containing protein. (240 aa)
	V4U2R6_9ROSI	Uncharacterized protein. (154 aa)
	V4U330_9ROSI	Uncharacterized protein. (192 aa)
	V4U8B9_9ROSI	Uncharacterized protein. (203 aa)
	V4UAK7_9ROSI	Uncharacterized protein. (34 aa)
	V4UI67_9ROSI	Ribosomal_S10 domain-containing protein. (187 aa)
	V4UL75_9ROSI	Uncharacterized protein. (149 aa)
	V4UM17_9ROSI	Uncharacterized protein. (222 aa)
	V4UNL8_9ROSI	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family. (160 aa)
	V4UT28_9ROSI	Uncharacterized protein. (540 aa)
	V4UTM1_9ROSI	Uncharacterized protein. (131 aa)
	V4V6Z9_9ROSI	Uncharacterized protein. (222 aa)
	V4V7U2_9ROSI	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (211 aa)
	V4VIG5_9ROSI	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (222 aa)
	V4W8N2_9ROSI	Uncharacterized protein. (251 aa)
	V4WCK9_9ROSI	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (101 aa)

Your Current Organism:

Citrus clementina

NCBI taxonomy Id: 85681
Other names: C. clementina, Citrus deliciosa x Citrus sinensis, clementine

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4RMK3_9ROSI	V4RN77_9ROSI	V4RMK3	V4RN77	Uncharacterized protein.	Uncharacterized protein.	0.879
V4RMK3_9ROSI	V4RTD8_9ROSI	V4RMK3	V4RTD8	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	0.952
V4RMK3_9ROSI	V4RUQ3_9ROSI	V4RMK3	V4RUQ3	Uncharacterized protein.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.971
V4RMK3_9ROSI	V4RUW5_9ROSI	V4RMK3	V4RUW5	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.877
V4RMK3_9ROSI	V4RXM0_9ROSI	V4RMK3	V4RXM0	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.935
V4RMK3_9ROSI	V4S186_9ROSI	V4RMK3	V4S186	Uncharacterized protein.	Ribosomal_L18e/L15P domain-containing protein.	0.874
V4RMK3_9ROSI	V4S2N4_9ROSI	V4RMK3	V4S2N4	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.925
V4RMK3_9ROSI	V4S625_9ROSI	V4RMK3	V4S625	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.954
V4RMK3_9ROSI	V4S8S2_9ROSI	V4RMK3	V4S8S2	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.951
V4RMK3_9ROSI	V4SJP9_9ROSI	V4RMK3	V4SJP9	Uncharacterized protein.	Ribosomal_TL5_C domain-containing protein.	0.959
V4RMK3_9ROSI	V4SKH7_9ROSI	V4RMK3	V4SKH7	Uncharacterized protein.	Uncharacterized protein.	0.936
V4RMK3_9ROSI	V4SR92_9ROSI	V4RMK3	V4SR92	Uncharacterized protein.	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.955
V4RMK3_9ROSI	V4SRV8_9ROSI	V4RMK3	V4SRV8	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.935
V4RMK3_9ROSI	V4SSU6_9ROSI	V4RMK3	V4SSU6	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS17 family.	0.900
V4RMK3_9ROSI	V4SXS2_9ROSI	V4RMK3	V4SXS2	Uncharacterized protein.	Ribosomal_TL5_C domain-containing protein.	0.959
V4RMK3_9ROSI	V4T176_9ROSI	V4RMK3	V4T176	Uncharacterized protein.	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.955
V4RMK3_9ROSI	V4T1A8_9ROSI	V4RMK3	V4T1A8	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.925
V4RMK3_9ROSI	V4T7I1_9ROSI	V4RMK3	V4T7I1	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	0.924
V4RMK3_9ROSI	V4TA42_9ROSI	V4RMK3	V4TA42	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.967
V4RMK3_9ROSI	V4TD26_9ROSI	V4RMK3	V4TD26	Uncharacterized protein.	Uncharacterized protein.	0.965