40 items (Citrus clementina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	V4WA49_9ROSI	Transcriptional adapter. (520 aa)
	V4TGS2_9ROSI	Uncharacterized protein. (164 aa)
	V4TDC1_9ROSI	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (116 aa)
	V4T6U0_9ROSI	Uncharacterized protein. (220 aa)
	V4T3B6_9ROSI	ASCH domain-containing protein. (304 aa)
	V4SXH2_9ROSI	KIX_2 domain-containing protein. (407 aa)
	V4SVQ0_9ROSI	DBC1 domain-containing protein. (1378 aa)
	V4SUA9_9ROSI	KIX_2 domain-containing protein. (1383 aa)
	V4STJ8_9ROSI	Uncharacterized protein. (1325 aa)
	V4SSU3_9ROSI	TMF_TATA_bd domain-containing protein. (967 aa)
	V4SRY7_9ROSI	Uncharacterized protein. (175 aa)
	V4SJD4_9ROSI	KIX_2 domain-containing protein. (161 aa)
	V4SJD1_9ROSI	KIX_2 domain-containing protein. (92 aa)
	V4SFG1_9ROSI	Uncharacterized protein. (229 aa)
	V4SFF6_9ROSI	Uncharacterized protein. (328 aa)
	V4SCY0_9ROSI	Uncharacterized protein. (171 aa)
	V4SB17_9ROSI	Uncharacterized protein. (202 aa)
	V4V0S1_9ROSI	PC4 domain-containing protein. (106 aa)
	V4VJH1_9ROSI	zf-C2HC5 domain-containing protein. (409 aa)
	V4WGF0_9ROSI	TAF domain-containing protein. (534 aa)
	V4RNY3_9ROSI	Uncharacterized protein. (360 aa)
	V4RUQ7_9ROSI	Uncharacterized protein. (1766 aa)
	V4RXP6_9ROSI	Uncharacterized protein. (251 aa)
	V4S0R5_9ROSI	Uncharacterized protein. (386 aa)
	V4S753_9ROSI	Uncharacterized protein. (438 aa)
	V4SAX6_9ROSI	Uncharacterized protein. (786 aa)
	V4UVL4_9ROSI	Uncharacterized protein. (613 aa)
	MED20	Mediator of RNA polymerase II transcription subunit 20; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (222 aa)
	V4UM05_9ROSI	Uncharacterized protein. (420 aa)
	V4UJD0_9ROSI	HTH cro/C1-type domain-containing protein. (73 aa)
	V4UHL6_9ROSI	TAFII28 domain-containing protein. (216 aa)
	V4UFE6_9ROSI	Transcriptional adapter. (568 aa)
	V4U4R2_9ROSI	TAF domain-containing protein. (542 aa)
	V4U340_9ROSI	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (111 aa)
	V4U0R7_9ROSI	HTH cro/C1-type domain-containing protein. (142 aa)
	V4TWR5_9ROSI	Uncharacterized protein. (211 aa)
	V4TW50_9ROSI	Uncharacterized protein. (115 aa)
	V4TTQ7_9ROSI	Uncharacterized protein. (784 aa)
	V4TLP5_9ROSI	Uncharacterized protein. (175 aa)
	V4TH60_9ROSI	Uncharacterized protein. (830 aa)

Your Current Organism:

Citrus clementina

NCBI taxonomy Id: 85681
Other names: C. clementina, Citrus deliciosa x Citrus sinensis, clementine

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MED20	V4RXP6_9ROSI	V4UQR3	V4RXP6	Mediator of RNA polymerase II transcription subunit 20; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Uncharacterized protein.	0.477
MED20	V4S753_9ROSI	V4UQR3	V4S753	Mediator of RNA polymerase II transcription subunit 20; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Uncharacterized protein.	0.485
V4RNY3_9ROSI	V4SRY7_9ROSI	V4RNY3	V4SRY7	Uncharacterized protein.	Uncharacterized protein.	0.571
V4RNY3_9ROSI	V4TDC1_9ROSI	V4RNY3	V4TDC1	Uncharacterized protein.	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]	0.473
V4RNY3_9ROSI	V4TLP5_9ROSI	V4RNY3	V4TLP5	Uncharacterized protein.	Uncharacterized protein.	0.571
V4RNY3_9ROSI	V4U340_9ROSI	V4RNY3	V4U340	Uncharacterized protein.	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]	0.473
V4RNY3_9ROSI	V4U4R2_9ROSI	V4RNY3	V4U4R2	Uncharacterized protein.	TAF domain-containing protein.	0.615
V4RNY3_9ROSI	V4UFE6_9ROSI	V4RNY3	V4UFE6	Uncharacterized protein.	Transcriptional adapter.	0.423
V4RNY3_9ROSI	V4WA49_9ROSI	V4RNY3	V4WA49	Uncharacterized protein.	Transcriptional adapter.	0.423
V4RNY3_9ROSI	V4WGF0_9ROSI	V4RNY3	V4WGF0	Uncharacterized protein.	TAF domain-containing protein.	0.615
V4RXP6_9ROSI	MED20	V4RXP6	V4UQR3	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 20; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.477
V4RXP6_9ROSI	V4S753_9ROSI	V4RXP6	V4S753	Uncharacterized protein.	Uncharacterized protein.	0.867
V4RXP6_9ROSI	V4SRY7_9ROSI	V4RXP6	V4SRY7	Uncharacterized protein.	Uncharacterized protein.	0.602
V4RXP6_9ROSI	V4TLP5_9ROSI	V4RXP6	V4TLP5	Uncharacterized protein.	Uncharacterized protein.	0.602
V4RXP6_9ROSI	V4U4R2_9ROSI	V4RXP6	V4U4R2	Uncharacterized protein.	TAF domain-containing protein.	0.476
V4RXP6_9ROSI	V4UHL6_9ROSI	V4RXP6	V4UHL6	Uncharacterized protein.	TAFII28 domain-containing protein.	0.706
V4RXP6_9ROSI	V4WGF0_9ROSI	V4RXP6	V4WGF0	Uncharacterized protein.	TAF domain-containing protein.	0.476
V4S753_9ROSI	MED20	V4S753	V4UQR3	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 20; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.485
V4S753_9ROSI	V4RXP6_9ROSI	V4S753	V4RXP6	Uncharacterized protein.	Uncharacterized protein.	0.867
V4S753_9ROSI	V4SUA9_9ROSI	V4S753	V4SUA9	Uncharacterized protein.	KIX_2 domain-containing protein.	0.419