40 items (Citrus clementina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	V4U1A0_9ROSI	RECA_2 domain-containing protein. (321 aa)
	V4RIK4_9ROSI	AAA domain-containing protein. (481 aa)
	V4RVR7_9ROSI	Uncharacterized protein. (767 aa)
	V4RXK1_9ROSI	Uncharacterized protein. (666 aa)
	V4S6M2_9ROSI	DNA_pol_E_B domain-containing protein. (209 aa)
	V4S916_9ROSI	Uncharacterized protein. (1200 aa)
	V4SAB8_9ROSI	CCHC-type domain-containing protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (297 aa)
	V4SAI6_9ROSI	Zf-primase domain-containing protein. (384 aa)
	V4SEQ3_9ROSI	Replication factor C subunit 1. (958 aa)
	V4SQ01_9ROSI	DNA polymerase. (1513 aa)
	V4SQX6_9ROSI	DNA_pol_D_N domain-containing protein. (252 aa)
	V4SXG4_9ROSI	DNA primase; Belongs to the eukaryotic-type primase small subunit family. (451 aa)
	V4T181_9ROSI	Uncharacterized protein. (1155 aa)
	V4T1L9_9ROSI	Uncharacterized protein. (1434 aa)
	V4T2V7_9ROSI	AAA domain-containing protein. (364 aa)
	V4T751_9ROSI	DNA polymerase. (1123 aa)
	V4T765_9ROSI	Helitron_like_N domain-containing protein. (783 aa)
	V4T8C5_9ROSI	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (858 aa)
	V4T931_9ROSI	ATP-dependent DNA helicase; Belongs to the helicase family. (475 aa)
	V4TBM0_9ROSI	Uncharacterized protein. (122 aa)
	V4TCV9_9ROSI	AAA domain-containing protein. (382 aa)
	V4TDU7_9ROSI	RECA_2 domain-containing protein. (261 aa)
	V4TEJ0_9ROSI	Uncharacterized protein. (742 aa)
	V4TFQ8_9ROSI	Uncharacterized protein. (303 aa)
	V4TIA0_9ROSI	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (620 aa)
	V4TIQ4_9ROSI	DNA_pol3_gamma3 domain-containing protein. (862 aa)
	V4TN43_9ROSI	Uncharacterized protein. (453 aa)
	V4TQJ3_9ROSI	DNA_pol3_gamma3 domain-containing protein. (1199 aa)
	V4TQK0_9ROSI	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (623 aa)
	V4TS61_9ROSI	Uncharacterized protein. (280 aa)
	V4TW55_9ROSI	Rep-A_N domain-containing protein. (119 aa)
	V4U0K8_9ROSI	Uncharacterized protein. (570 aa)
	V4U186_9ROSI	Uncharacterized protein. (265 aa)
	V4U3R4_9ROSI	Uncharacterized protein. (374 aa)
	V4UF12_9ROSI	RECA_2 domain-containing protein. (357 aa)
	V4UYZ0_9ROSI	AAA domain-containing protein. (1268 aa)
	V4VLY3_9ROSI	AAA domain-containing protein. (331 aa)
	V4VU62_9ROSI	AAA domain-containing protein. (354 aa)
	V4W6U5_9ROSI	UmuC domain-containing protein. (732 aa)
	V4WE54_9ROSI	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (653 aa)

Your Current Organism:

Citrus clementina

NCBI taxonomy Id: 85681
Other names: C. clementina, Citrus deliciosa x Citrus sinensis, clementine

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4RIK4_9ROSI	V4RVR7_9ROSI	V4RIK4	V4RVR7	AAA domain-containing protein.	Uncharacterized protein.	0.919
V4RIK4_9ROSI	V4S6M2_9ROSI	V4RIK4	V4S6M2	AAA domain-containing protein.	DNA_pol_E_B domain-containing protein.	0.523
V4RIK4_9ROSI	V4S916_9ROSI	V4RIK4	V4S916	AAA domain-containing protein.	Uncharacterized protein.	0.731
V4RIK4_9ROSI	V4SAB8_9ROSI	V4RIK4	V4SAB8	AAA domain-containing protein.	CCHC-type domain-containing protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family.	0.714
V4RIK4_9ROSI	V4SAI6_9ROSI	V4RIK4	V4SAI6	AAA domain-containing protein.	Zf-primase domain-containing protein.	0.462
V4RIK4_9ROSI	V4SEQ3_9ROSI	V4RIK4	V4SEQ3	AAA domain-containing protein.	Replication factor C subunit 1.	0.795
V4RIK4_9ROSI	V4SQ01_9ROSI	V4RIK4	V4SQ01	AAA domain-containing protein.	DNA polymerase.	0.963
V4RIK4_9ROSI	V4SQX6_9ROSI	V4RIK4	V4SQX6	AAA domain-containing protein.	DNA_pol_D_N domain-containing protein.	0.523
V4RIK4_9ROSI	V4SXG4_9ROSI	V4RIK4	V4SXG4	AAA domain-containing protein.	DNA primase; Belongs to the eukaryotic-type primase small subunit family.	0.665
V4RIK4_9ROSI	V4T1L9_9ROSI	V4RIK4	V4T1L9	AAA domain-containing protein.	Uncharacterized protein.	0.893
V4RIK4_9ROSI	V4T2V7_9ROSI	V4RIK4	V4T2V7	AAA domain-containing protein.	AAA domain-containing protein.	0.983
V4RIK4_9ROSI	V4T751_9ROSI	V4RIK4	V4T751	AAA domain-containing protein.	DNA polymerase.	0.878
V4RIK4_9ROSI	V4TCV9_9ROSI	V4RIK4	V4TCV9	AAA domain-containing protein.	AAA domain-containing protein.	0.893
V4RIK4_9ROSI	V4TEJ0_9ROSI	V4RIK4	V4TEJ0	AAA domain-containing protein.	Uncharacterized protein.	0.919
V4RIK4_9ROSI	V4TIA0_9ROSI	V4RIK4	V4TIA0	AAA domain-containing protein.	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.	0.767
V4RIK4_9ROSI	V4TIQ4_9ROSI	V4RIK4	V4TIQ4	AAA domain-containing protein.	DNA_pol3_gamma3 domain-containing protein.	0.893
V4RIK4_9ROSI	V4TN43_9ROSI	V4RIK4	V4TN43	AAA domain-containing protein.	Uncharacterized protein.	0.875
V4RIK4_9ROSI	V4TQJ3_9ROSI	V4RIK4	V4TQJ3	AAA domain-containing protein.	DNA_pol3_gamma3 domain-containing protein.	0.893
V4RIK4_9ROSI	V4TS61_9ROSI	V4RIK4	V4TS61	AAA domain-containing protein.	Uncharacterized protein.	0.444
V4RIK4_9ROSI	V4U186_9ROSI	V4RIK4	V4U186	AAA domain-containing protein.	Uncharacterized protein.	0.444