15 items (Citrus clementina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	V4URP7_9ROSI	Uncharacterized protein. (267 aa)
	V4SAX6_9ROSI	Uncharacterized protein. (786 aa)
	V4T3I6_9ROSI	Uncharacterized protein. (179 aa)
	V4SYK4_9ROSI	Uncharacterized protein. (345 aa)
	V4SKX3_9ROSI	C2H2-type domain-containing protein. (362 aa)
	V4SJ40_9ROSI	Uncharacterized protein. (158 aa)
	V4SGD9_9ROSI	Uncharacterized protein. (643 aa)
	V4SB26_9ROSI	C2H2-type domain-containing protein. (382 aa)
	V4V6Q2_9ROSI	Uncharacterized protein. (158 aa)
	V4V257_9ROSI	Uncharacterized protein. (276 aa)
	V4U4R7_9ROSI	Uncharacterized protein. (134 aa)
	V4TV02_9ROSI	WD_REPEATS_REGION domain-containing protein. (374 aa)
	V4TTQ7_9ROSI	Uncharacterized protein. (784 aa)
	V4TKU6_9ROSI	Uncharacterized protein. (643 aa)
	V4T3W5_9ROSI	C2H2-type domain-containing protein. (524 aa)

Your Current Organism:

Citrus clementina

NCBI taxonomy Id: 85681
Other names: C. clementina, Citrus deliciosa x Citrus sinensis, clementine

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4SB26_9ROSI	V4URP7_9ROSI	V4SB26	V4URP7	C2H2-type domain-containing protein.	Uncharacterized protein.	0.453
V4SKX3_9ROSI	V4URP7_9ROSI	V4SKX3	V4URP7	C2H2-type domain-containing protein.	Uncharacterized protein.	0.453
V4T3W5_9ROSI	V4URP7_9ROSI	V4T3W5	V4URP7	C2H2-type domain-containing protein.	Uncharacterized protein.	0.556
V4TKU6_9ROSI	V4URP7_9ROSI	V4TKU6	V4URP7	Uncharacterized protein.	Uncharacterized protein.	0.489
V4URP7_9ROSI	V4SB26_9ROSI	V4URP7	V4SB26	Uncharacterized protein.	C2H2-type domain-containing protein.	0.453
V4URP7_9ROSI	V4SKX3_9ROSI	V4URP7	V4SKX3	Uncharacterized protein.	C2H2-type domain-containing protein.	0.453
V4URP7_9ROSI	V4T3W5_9ROSI	V4URP7	V4T3W5	Uncharacterized protein.	C2H2-type domain-containing protein.	0.556
V4URP7_9ROSI	V4TKU6_9ROSI	V4URP7	V4TKU6	Uncharacterized protein.	Uncharacterized protein.	0.489