14 items (Citrus clementina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	V4SLV0_9ROSI	Uncharacterized protein. (447 aa)
	V4URH3_9ROSI	Uncharacterized protein. (586 aa)
	V4RXR7_9ROSI	Galectin domain-containing protein. (652 aa)
	V4RWU5_9ROSI	Uncharacterized protein. (452 aa)
	V4TQP4_9ROSI	Hexosyltransferase; Belongs to the glycosyltransferase 8 family. (535 aa)
	V4TEQ6_9ROSI	Uncharacterized protein. (374 aa)
	V4T930_9ROSI	Uncharacterized protein. (102 aa)
	V4SAX6_9ROSI	Uncharacterized protein. (786 aa)
	V4VBQ0_9ROSI	Sec8_exocyst domain-containing protein. (725 aa)
	V4TTQ7_9ROSI	Uncharacterized protein. (784 aa)
	V4W3N9_9ROSI	Hexosyltransferase; Belongs to the glycosyltransferase 8 family. (532 aa)
	V4TY93_9ROSI	HTH myb-type domain-containing protein. (257 aa)
	V4U9B8_9ROSI	Uncharacterized protein. (618 aa)
	V4SPN1_9ROSI	Uncharacterized protein. (180 aa)

Your Current Organism:

Citrus clementina

NCBI taxonomy Id: 85681
Other names: C. clementina, Citrus deliciosa x Citrus sinensis, clementine

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4RXR7_9ROSI	V4SLV0_9ROSI	V4RXR7	V4SLV0	Galectin domain-containing protein.	Uncharacterized protein.	0.455
V4SLV0_9ROSI	V4RXR7_9ROSI	V4SLV0	V4RXR7	Uncharacterized protein.	Galectin domain-containing protein.	0.455
V4SPN1_9ROSI	V4T930_9ROSI	V4SPN1	V4T930	Uncharacterized protein.	Uncharacterized protein.	0.862
V4SPN1_9ROSI	V4VBQ0_9ROSI	V4SPN1	V4VBQ0	Uncharacterized protein.	Sec8_exocyst domain-containing protein.	0.943
V4T930_9ROSI	V4SPN1_9ROSI	V4T930	V4SPN1	Uncharacterized protein.	Uncharacterized protein.	0.862
V4T930_9ROSI	V4VBQ0_9ROSI	V4T930	V4VBQ0	Uncharacterized protein.	Sec8_exocyst domain-containing protein.	0.923
V4VBQ0_9ROSI	V4SPN1_9ROSI	V4VBQ0	V4SPN1	Sec8_exocyst domain-containing protein.	Uncharacterized protein.	0.943
V4VBQ0_9ROSI	V4T930_9ROSI	V4VBQ0	V4T930	Sec8_exocyst domain-containing protein.	Uncharacterized protein.	0.923