9 items (Citrus clementina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	V4SW75_9ROSI	Uncharacterized protein. (391 aa)
	V4WBN9_9ROSI	Uncharacterized protein. (920 aa)
	V4UU09_9ROSI	PMEI domain-containing protein. (199 aa)
	V4TY63_9ROSI	Uncharacterized protein. (218 aa)
	V4TTQ7_9ROSI	Uncharacterized protein. (784 aa)
	V4TPH4_9ROSI	Uncharacterized protein. (252 aa)
	V4TL62_9ROSI	Uncharacterized protein. (2041 aa)
	V4T902_9ROSI	WD_REPEATS_REGION domain-containing protein. (451 aa)
	V4SAX6_9ROSI	Uncharacterized protein. (786 aa)

Your Current Organism:

Citrus clementina

NCBI taxonomy Id: 85681
Other names: C. clementina, Citrus deliciosa x Citrus sinensis, clementine

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4SAX6_9ROSI	V4T902_9ROSI	V4SAX6	V4T902	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.488
V4T902_9ROSI	V4SAX6_9ROSI	V4T902	V4SAX6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.488
V4T902_9ROSI	V4TL62_9ROSI	V4T902	V4TL62	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.495
V4T902_9ROSI	V4TTQ7_9ROSI	V4T902	V4TTQ7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.501
V4T902_9ROSI	V4WBN9_9ROSI	V4T902	V4WBN9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.450
V4TL62_9ROSI	V4T902_9ROSI	V4TL62	V4T902	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.495
V4TTQ7_9ROSI	V4T902_9ROSI	V4TTQ7	V4T902	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.501
V4WBN9_9ROSI	V4T902_9ROSI	V4WBN9	V4T902	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.450