27 items (Citrus clementina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	V4UJG3_9ROSI	Uncharacterized protein. (512 aa)
	V4T839_9ROSI	Uncharacterized protein. (416 aa)
	V4TF73_9ROSI	Uncharacterized protein. (215 aa)
	V4UIT6_9ROSI	Uncharacterized protein. (564 aa)
	V4UHH1_9ROSI	Uncharacterized protein. (581 aa)
	V4UE11_9ROSI	Uncharacterized protein. (837 aa)
	V4TTZ0_9ROSI	Uncharacterized protein. (565 aa)
	V4TTQ7_9ROSI	Uncharacterized protein. (784 aa)
	V4TSZ2_9ROSI	Uncharacterized protein. (790 aa)
	V4SAX6_9ROSI	Uncharacterized protein. (786 aa)
	V4SGF0_9ROSI	Uncharacterized protein. (1130 aa)
	V4SNN9_9ROSI	LisH domain-containing protein. (265 aa)
	V4SPB1_9ROSI	Uncharacterized protein. (1142 aa)
	V4WCF1_9ROSI	Uncharacterized protein. (1134 aa)
	V4WBN9_9ROSI	Uncharacterized protein. (920 aa)
	V4VTC2_9ROSI	Uncharacterized protein. (689 aa)
	V4UMH4_9ROSI	Uncharacterized protein. (1095 aa)
	V4UMC7_9ROSI	LisH domain-containing protein. (98 aa)
	V4UJW0_9ROSI	LisH domain-containing protein. (339 aa)
	V4SQP3_9ROSI	Uncharacterized protein. (382 aa)
	V4RFT5_9ROSI	Uncharacterized protein. (1131 aa)
	V4S694_9ROSI	Uncharacterized protein. (385 aa)
	V4S8X9_9ROSI	Uncharacterized protein. (1188 aa)
	V4S8Z7_9ROSI	WD_REPEATS_REGION domain-containing protein. (512 aa)
	V4TPR8_9ROSI	Uncharacterized protein. (242 aa)
	V4TRZ9_9ROSI	LisH domain-containing protein. (1922 aa)
	V4TKK5_9ROSI	Uncharacterized protein. (581 aa)

Your Current Organism:

Citrus clementina

NCBI taxonomy Id: 85681
Other names: C. clementina, Citrus deliciosa x Citrus sinensis, clementine

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4RFT5_9ROSI	V4SAX6_9ROSI	V4RFT5	V4SAX6	Uncharacterized protein.	Uncharacterized protein.	0.400
V4RFT5_9ROSI	V4UE11_9ROSI	V4RFT5	V4UE11	Uncharacterized protein.	Uncharacterized protein.	0.408
V4S694_9ROSI	V4T839_9ROSI	V4S694	V4T839	Uncharacterized protein.	Uncharacterized protein.	0.954
V4S694_9ROSI	V4TF73_9ROSI	V4S694	V4TF73	Uncharacterized protein.	Uncharacterized protein.	0.821
V4S694_9ROSI	V4TKK5_9ROSI	V4S694	V4TKK5	Uncharacterized protein.	Uncharacterized protein.	0.773
V4S694_9ROSI	V4TPR8_9ROSI	V4S694	V4TPR8	Uncharacterized protein.	Uncharacterized protein.	0.860
V4S694_9ROSI	V4TTZ0_9ROSI	V4S694	V4TTZ0	Uncharacterized protein.	Uncharacterized protein.	0.773
V4S694_9ROSI	V4UHH1_9ROSI	V4S694	V4UHH1	Uncharacterized protein.	Uncharacterized protein.	0.773
V4SAX6_9ROSI	V4RFT5_9ROSI	V4SAX6	V4RFT5	Uncharacterized protein.	Uncharacterized protein.	0.400
V4SAX6_9ROSI	V4SPB1_9ROSI	V4SAX6	V4SPB1	Uncharacterized protein.	Uncharacterized protein.	0.437
V4SAX6_9ROSI	V4UMH4_9ROSI	V4SAX6	V4UMH4	Uncharacterized protein.	Uncharacterized protein.	0.506
V4SAX6_9ROSI	V4WCF1_9ROSI	V4SAX6	V4WCF1	Uncharacterized protein.	Uncharacterized protein.	0.424
V4SPB1_9ROSI	V4SAX6_9ROSI	V4SPB1	V4SAX6	Uncharacterized protein.	Uncharacterized protein.	0.437
V4SPB1_9ROSI	V4TTQ7_9ROSI	V4SPB1	V4TTQ7	Uncharacterized protein.	Uncharacterized protein.	0.446
V4SPB1_9ROSI	V4UE11_9ROSI	V4SPB1	V4UE11	Uncharacterized protein.	Uncharacterized protein.	0.446
V4SPB1_9ROSI	V4WBN9_9ROSI	V4SPB1	V4WBN9	Uncharacterized protein.	Uncharacterized protein.	0.468
V4SQP3_9ROSI	V4T839_9ROSI	V4SQP3	V4T839	Uncharacterized protein.	Uncharacterized protein.	0.954
V4SQP3_9ROSI	V4TF73_9ROSI	V4SQP3	V4TF73	Uncharacterized protein.	Uncharacterized protein.	0.821
V4SQP3_9ROSI	V4TKK5_9ROSI	V4SQP3	V4TKK5	Uncharacterized protein.	Uncharacterized protein.	0.773
V4SQP3_9ROSI	V4TPR8_9ROSI	V4SQP3	V4TPR8	Uncharacterized protein.	Uncharacterized protein.	0.862