(57 nodes) Ribosomal protein S5 domain 2-type fold network (Citrus clementina)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	V4TM62_9ROSI	HATPase_c domain-containing protein. (702 aa)
	V4TLQ3_9ROSI	Uncharacterized protein. (319 aa)
	V4TKJ8_9ROSI	HATPase_c domain-containing protein. (801 aa)
	V4TJ04_9ROSI	Lon protease homolog 2, peroxisomal; ATP-dependent serine protease that mediates the selective degradation of misfolded and unassembled polypeptides in the peroxisomal matrix. Necessary for type 2 peroxisome targeting signal (PTS2)-containing protein processing and facilitates peroxisome matrix protein import; Belongs to the peptidase S16 family. ECO:0000256\|PROSITE-. (886 aa)
	V4TEY6_9ROSI	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family. (420 aa)
	V4TB35_9ROSI	DNA_mis_repair domain-containing protein. (405 aa)
	V4TB01_9ROSI	Lon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner; Belongs to the peptidase S16 family. (1043 aa)
	V4TA70_9ROSI	HATPase_c domain-containing protein. (820 aa)
	V4T921_9ROSI	Uncharacterized protein. (241 aa)
	V4T8Z4_9ROSI	Uncharacterized protein. (278 aa)
	V4SX65_9ROSI	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (166 aa)
	V4V7U2_9ROSI	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (211 aa)
	V4VE22_9ROSI	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (545 aa)
	V4VI75_9ROSI	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1456 aa)
	V4VID0_9ROSI	RNase_PH domain-containing protein. (100 aa)
	V4VLJ4_9ROSI	Elongation factor G, chloroplastic; Chloroplast-localized elongation factor EF-G involved in protein synthesis in plastids. Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl- tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (777 aa)
	V4VN61_9ROSI	Tr-type G domain-containing protein. (843 aa)
	V4VXC4_9ROSI	Uncharacterized protein. (979 aa)
	V4WGV2_9ROSI	HATPase_c domain-containing protein. (700 aa)
	V4SVY2_9ROSI	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (274 aa)
	V4ST94_9ROSI	HATPase_c domain-containing protein. (793 aa)
	V4SSQ9_9ROSI	Tr-type G domain-containing protein. (1024 aa)
	V4SSQ8_9ROSI	RECA_2 domain-containing protein. (622 aa)
	V4SKY1_9ROSI	UPF0029 domain-containing protein. (244 aa)
	V4U3L7_9ROSI	S1 motif domain-containing protein. (645 aa)
	V4SFV0_9ROSI	Mevalonate kinase. (398 aa)
	V4SE72_9ROSI	HATPase_c domain-containing protein. (699 aa)
	V4SCJ2_9ROSI	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (272 aa)
	V4S919_9ROSI	Ribosomal_S5_C domain-containing protein. (226 aa)
	V4SI40_9ROSI	Uncharacterized protein. (1493 aa)
	V4U544_9ROSI	DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner. (718 aa)
	V4U5Z9_9ROSI	Uncharacterized protein. (302 aa)
	V4V270_9ROSI	Uncharacterized protein. (504 aa)
	V4URH2_9ROSI	Tr-type G domain-containing protein. (989 aa)
	V4U840_9ROSI	Tr-type G domain-containing protein. (843 aa)
	V4U8R6_9ROSI	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (761 aa)
	V4U9D7_9ROSI	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (305 aa)
	V4UA38_9ROSI	Uncharacterized protein. (287 aa)
	TOP6B	DNA topoisomerase 6 subunit B; Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity. The B subunit binds ATP; Belongs to the TOP6B family. (667 aa)
	V4UAY8_9ROSI	Uncharacterized protein. (464 aa)
	V4UEP3_9ROSI	Uncharacterized protein. (260 aa)
	V4UGL9_9ROSI	Uncharacterized protein. (993 aa)
	V4U1U9_9ROSI	Uncharacterized protein. (383 aa)
	V4U1T4_9ROSI	Imidazoleglycerol-phosphate dehydratase; Belongs to the imidazoleglycerol-phosphate dehydratase family. (277 aa)
	V4U1N7_9ROSI	S1 motif domain-containing protein. (973 aa)
	V4U1C2_9ROSI	Uncharacterized protein. (384 aa)
	V4TZZ0_9ROSI	Uncharacterized protein. (499 aa)
	V4TTQ0_9ROSI	RNase_PH domain-containing protein. (243 aa)
	V4TRU7_9ROSI	RNase_PH domain-containing protein. (180 aa)
	V4TP73_9ROSI	DNA_mis_repair domain-containing protein. (735 aa)
	V4S8Z0_9ROSI	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (268 aa)
	V4S8S2_9ROSI	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (363 aa)
	V4S723_9ROSI	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (148 aa)
	V4S5J7_9ROSI	Uncharacterized protein. (366 aa)
	V4S2P1_9ROSI	Uncharacterized protein. (499 aa)
	V4UJV3_9ROSI	Uncharacterized protein. (437 aa)
	V4RGP4_9ROSI	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (147 aa)

Your Current Organism:

Citrus clementina

NCBI taxonomy Id: 85681
Other names: C. clementina, Citrus deliciosa x Citrus sinensis, clementine

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4RGP4_9ROSI	V4S723_9ROSI	V4RGP4	V4S723	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.900
V4RGP4_9ROSI	V4S8S2_9ROSI	V4RGP4	V4S8S2	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.905
V4RGP4_9ROSI	V4S8Z0_9ROSI	V4RGP4	V4S8Z0	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.932
V4RGP4_9ROSI	V4S919_9ROSI	V4RGP4	V4S919	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Ribosomal_S5_C domain-containing protein.	0.932
V4RGP4_9ROSI	V4SCJ2_9ROSI	V4RGP4	V4SCJ2	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.932
V4RGP4_9ROSI	V4SSQ9_9ROSI	V4RGP4	V4SSQ9	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Tr-type G domain-containing protein.	0.746
V4RGP4_9ROSI	V4SVY2_9ROSI	V4RGP4	V4SVY2	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.932
V4RGP4_9ROSI	V4SX65_9ROSI	V4RGP4	V4SX65	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.932
V4RGP4_9ROSI	V4TRU7_9ROSI	V4RGP4	V4TRU7	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	RNase_PH domain-containing protein.	0.450
V4RGP4_9ROSI	V4TTQ0_9ROSI	V4RGP4	V4TTQ0	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	RNase_PH domain-containing protein.	0.480
V4RGP4_9ROSI	V4U5Z9_9ROSI	V4RGP4	V4U5Z9	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein.	0.457
V4RGP4_9ROSI	V4U840_9ROSI	V4RGP4	V4U840	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Tr-type G domain-containing protein.	0.952
V4RGP4_9ROSI	V4U8R6_9ROSI	V4RGP4	V4U8R6	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	0.746
V4RGP4_9ROSI	V4U9D7_9ROSI	V4RGP4	V4U9D7	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.932
V4RGP4_9ROSI	V4UA38_9ROSI	V4RGP4	V4UA38	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein.	0.628
V4RGP4_9ROSI	V4UAY8_9ROSI	V4RGP4	V4UAY8	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein.	0.450
V4RGP4_9ROSI	V4URH2_9ROSI	V4RGP4	V4URH2	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Tr-type G domain-containing protein.	0.770
V4RGP4_9ROSI	V4V7U2_9ROSI	V4RGP4	V4V7U2	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.905
V4RGP4_9ROSI	V4VE22_9ROSI	V4RGP4	V4VE22	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.835
V4RGP4_9ROSI	V4VID0_9ROSI	V4RGP4	V4VID0	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	RNase_PH domain-containing protein.	0.480