17 items (Citrus clementina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	V4TRS7_9ROSI	Probable 6-phosphogluconolactonase; Belongs to the glucosamine/galactosamine-6-phosphate isomerase family. 6-phosphogluconolactonase subfamily. (323 aa)
	V4RHQ9_9ROSI	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family. (406 aa)
	V4SI24_9ROSI	Probable 6-phosphogluconolactonase; Belongs to the glucosamine/galactosamine-6-phosphate isomerase family. 6-phosphogluconolactonase subfamily. (291 aa)
	V4SJ51_9ROSI	Uncharacterized protein. (326 aa)
	V4TNE9_9ROSI	Uncharacterized protein. (316 aa)
	V4SMB0_9ROSI	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family. (395 aa)
	V4STJ4_9ROSI	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family. (659 aa)
	V4T002_9ROSI	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family. (419 aa)
	V4T1X0_9ROSI	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family. (692 aa)
	V4T9I4_9ROSI	Uncharacterized protein. (274 aa)
	V4THV6_9ROSI	5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family. (247 aa)
	V4TJJ8_9ROSI	5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family. (294 aa)
	V4TM32_9ROSI	Uncharacterized protein. (260 aa)
	V4TMV4_9ROSI	Probable 6-phosphogluconolactonase; Belongs to the glucosamine/galactosamine-6-phosphate isomerase family. 6-phosphogluconolactonase subfamily. (266 aa)
	V4RIW4_9ROSI	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family. (417 aa)
	V4UIT4_9ROSI	Methylthioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P). Belongs to the eIF-2B alpha/beta/delta subunits family. MtnA subfamily. (373 aa)
	V4UVF2_9ROSI	Uncharacterized protein. (200 aa)

Your Current Organism:

Citrus clementina

NCBI taxonomy Id: 85681
Other names: C. clementina, Citrus deliciosa x Citrus sinensis, clementine

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4RHQ9_9ROSI	V4SMB0_9ROSI	V4RHQ9	V4SMB0	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	0.982
V4RHQ9_9ROSI	V4STJ4_9ROSI	V4RHQ9	V4STJ4	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	0.962
V4RHQ9_9ROSI	V4T1X0_9ROSI	V4RHQ9	V4T1X0	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	0.961
V4RIW4_9ROSI	V4SMB0_9ROSI	V4RIW4	V4SMB0	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	0.982
V4RIW4_9ROSI	V4STJ4_9ROSI	V4RIW4	V4STJ4	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	0.961
V4RIW4_9ROSI	V4T1X0_9ROSI	V4RIW4	V4T1X0	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	0.961
V4SI24_9ROSI	V4TMV4_9ROSI	V4SI24	V4TMV4	Probable 6-phosphogluconolactonase; Belongs to the glucosamine/galactosamine-6-phosphate isomerase family. 6-phosphogluconolactonase subfamily.	Probable 6-phosphogluconolactonase; Belongs to the glucosamine/galactosamine-6-phosphate isomerase family. 6-phosphogluconolactonase subfamily.	0.903
V4SI24_9ROSI	V4TRS7_9ROSI	V4SI24	V4TRS7	Probable 6-phosphogluconolactonase; Belongs to the glucosamine/galactosamine-6-phosphate isomerase family. 6-phosphogluconolactonase subfamily.	Probable 6-phosphogluconolactonase; Belongs to the glucosamine/galactosamine-6-phosphate isomerase family. 6-phosphogluconolactonase subfamily.	0.907
V4SJ51_9ROSI	V4THV6_9ROSI	V4SJ51	V4THV6	Uncharacterized protein.	5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.	0.943
V4SJ51_9ROSI	V4TJJ8_9ROSI	V4SJ51	V4TJJ8	Uncharacterized protein.	5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.	0.943
V4SMB0_9ROSI	V4RHQ9_9ROSI	V4SMB0	V4RHQ9	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	0.982
V4SMB0_9ROSI	V4RIW4_9ROSI	V4SMB0	V4RIW4	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	0.982
V4SMB0_9ROSI	V4STJ4_9ROSI	V4SMB0	V4STJ4	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	0.987
V4SMB0_9ROSI	V4T002_9ROSI	V4SMB0	V4T002	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	0.982
V4SMB0_9ROSI	V4T1X0_9ROSI	V4SMB0	V4T1X0	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	0.987
V4STJ4_9ROSI	V4RHQ9_9ROSI	V4STJ4	V4RHQ9	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	0.962
V4STJ4_9ROSI	V4RIW4_9ROSI	V4STJ4	V4RIW4	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	0.961
V4STJ4_9ROSI	V4SMB0_9ROSI	V4STJ4	V4SMB0	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	0.987
V4STJ4_9ROSI	V4T002_9ROSI	V4STJ4	V4T002	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	0.961
V4T002_9ROSI	V4SMB0_9ROSI	V4T002	V4SMB0	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	0.982