31 items (Citrus clementina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

co-expression

protein homology

Your Input:
	V4SD56_9ROSI	Uncharacterized protein. (175 aa)
	V4SCI8_9ROSI	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (266 aa)
	V4RVR7_9ROSI	Uncharacterized protein. (767 aa)
	V4VLY3_9ROSI	AAA domain-containing protein. (331 aa)
	V4VNL9_9ROSI	NAC domain-containing protein. (605 aa)
	V4VU62_9ROSI	AAA domain-containing protein. (354 aa)
	V4WE54_9ROSI	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (653 aa)
	V4TZ66_9ROSI	NAC domain-containing protein. (306 aa)
	V4UDK9_9ROSI	NAC domain-containing protein. (391 aa)
	V4UYZ0_9ROSI	AAA domain-containing protein. (1268 aa)
	V4VGA7_9ROSI	Ubiquitin-like domain-containing protein. (156 aa)
	V4TV50_9ROSI	Lipase_GDSL domain-containing protein. (219 aa)
	V4TRG2_9ROSI	HORMA domain-containing protein. (204 aa)
	V4TW55_9ROSI	Rep-A_N domain-containing protein. (119 aa)
	V4V3U9_9ROSI	DNA polymerase. (1741 aa)
	V4TR99_9ROSI	NAC domain-containing protein. (632 aa)
	V4TQK0_9ROSI	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (623 aa)
	V4TQJ3_9ROSI	DNA_pol3_gamma3 domain-containing protein. (1199 aa)
	V4TIQ4_9ROSI	DNA_pol3_gamma3 domain-containing protein. (862 aa)
	V4TEJ0_9ROSI	Uncharacterized protein. (742 aa)
	V4TDH5_9ROSI	F-box domain-containing protein. (175 aa)
	V4TCV9_9ROSI	AAA domain-containing protein. (382 aa)
	V4TBY1_9ROSI	Ubiquitin-like domain-containing protein. (96 aa)
	V4T8C5_9ROSI	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (858 aa)
	V4T2V7_9ROSI	AAA domain-containing protein. (364 aa)
	V4T2P9_9ROSI	AAA domain-containing protein. (1204 aa)
	V4RT13_9ROSI	Ubiquitin-like domain-containing protein. (156 aa)
	V4RRA1_9ROSI	PCNA_C domain-containing protein. (113 aa)
	V4SGM4_9ROSI	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (1041 aa)
	V4SEQ3_9ROSI	Replication factor C subunit 1. (958 aa)
	V4SDL5_9ROSI	Ribosomal_S27 domain-containing protein. (80 aa)

Your Current Organism:

Citrus clementina

NCBI taxonomy Id: 85681
Other names: C. clementina, Citrus deliciosa x Citrus sinensis, clementine

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4RRA1_9ROSI	V4RT13_9ROSI	V4RRA1	V4RT13	PCNA_C domain-containing protein.	Ubiquitin-like domain-containing protein.	0.847
V4RRA1_9ROSI	V4RVR7_9ROSI	V4RRA1	V4RVR7	PCNA_C domain-containing protein.	Uncharacterized protein.	0.966
V4RRA1_9ROSI	V4SD56_9ROSI	V4RRA1	V4SD56	PCNA_C domain-containing protein.	Uncharacterized protein.	0.723
V4RRA1_9ROSI	V4SDL5_9ROSI	V4RRA1	V4SDL5	PCNA_C domain-containing protein.	Ribosomal_S27 domain-containing protein.	0.847
V4RRA1_9ROSI	V4SEQ3_9ROSI	V4RRA1	V4SEQ3	PCNA_C domain-containing protein.	Replication factor C subunit 1.	0.963
V4RRA1_9ROSI	V4SGM4_9ROSI	V4RRA1	V4SGM4	PCNA_C domain-containing protein.	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family.	0.978
V4RRA1_9ROSI	V4T2P9_9ROSI	V4RRA1	V4T2P9	PCNA_C domain-containing protein.	AAA domain-containing protein.	0.963
V4RRA1_9ROSI	V4T2V7_9ROSI	V4RRA1	V4T2V7	PCNA_C domain-containing protein.	AAA domain-containing protein.	0.983
V4RRA1_9ROSI	V4T8C5_9ROSI	V4RRA1	V4T8C5	PCNA_C domain-containing protein.	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses.	0.723
V4RRA1_9ROSI	V4TBY1_9ROSI	V4RRA1	V4TBY1	PCNA_C domain-containing protein.	Ubiquitin-like domain-containing protein.	0.847
V4RRA1_9ROSI	V4TCV9_9ROSI	V4RRA1	V4TCV9	PCNA_C domain-containing protein.	AAA domain-containing protein.	0.959
V4RRA1_9ROSI	V4TDH5_9ROSI	V4RRA1	V4TDH5	PCNA_C domain-containing protein.	F-box domain-containing protein.	0.723
V4RRA1_9ROSI	V4TEJ0_9ROSI	V4RRA1	V4TEJ0	PCNA_C domain-containing protein.	Uncharacterized protein.	0.966
V4RRA1_9ROSI	V4TIQ4_9ROSI	V4RRA1	V4TIQ4	PCNA_C domain-containing protein.	DNA_pol3_gamma3 domain-containing protein.	0.959
V4RRA1_9ROSI	V4TQJ3_9ROSI	V4RRA1	V4TQJ3	PCNA_C domain-containing protein.	DNA_pol3_gamma3 domain-containing protein.	0.959
V4RRA1_9ROSI	V4TQK0_9ROSI	V4RRA1	V4TQK0	PCNA_C domain-containing protein.	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses.	0.723
V4RRA1_9ROSI	V4TR99_9ROSI	V4RRA1	V4TR99	PCNA_C domain-containing protein.	NAC domain-containing protein.	0.723
V4RRA1_9ROSI	V4TRG2_9ROSI	V4RRA1	V4TRG2	PCNA_C domain-containing protein.	HORMA domain-containing protein.	0.832
V4RRA1_9ROSI	V4TV50_9ROSI	V4RRA1	V4TV50	PCNA_C domain-containing protein.	Lipase_GDSL domain-containing protein.	0.723
V4RRA1_9ROSI	V4TW55_9ROSI	V4RRA1	V4TW55	PCNA_C domain-containing protein.	Rep-A_N domain-containing protein.	0.723