13 items (Citrus clementina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	V4SMB0_9ROSI	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family. (395 aa)
	V4RHQ9_9ROSI	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family. (406 aa)
	V4T029_9ROSI	eIF2B_5 domain-containing protein. (86 aa)
	V4T002_9ROSI	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family. (419 aa)
	V4STJ4_9ROSI	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family. (659 aa)
	V4RYA8_9ROSI	Tr-type G domain-containing protein. (466 aa)
	V4RIW4_9ROSI	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family. (417 aa)
	V4WBX6_9ROSI	Uncharacterized protein. (476 aa)
	V4UBH0_9ROSI	NTP_transferase domain-containing protein. (456 aa)
	V4TN72_9ROSI	eIF2B_5 domain-containing protein. (270 aa)
	V4TBU3_9ROSI	S1 motif domain-containing protein. (344 aa)
	V4T507_9ROSI	W2 domain-containing protein. (732 aa)
	V4T1X0_9ROSI	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family. (692 aa)

Your Current Organism:

Citrus clementina

NCBI taxonomy Id: 85681
Other names: C. clementina, Citrus deliciosa x Citrus sinensis, clementine

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4RHQ9_9ROSI	V4RYA8_9ROSI	V4RHQ9	V4RYA8	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Tr-type G domain-containing protein.	0.980
V4RHQ9_9ROSI	V4SMB0_9ROSI	V4RHQ9	V4SMB0	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	0.982
V4RHQ9_9ROSI	V4STJ4_9ROSI	V4RHQ9	V4STJ4	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	0.962
V4RHQ9_9ROSI	V4T029_9ROSI	V4RHQ9	V4T029	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	eIF2B_5 domain-containing protein.	0.975
V4RHQ9_9ROSI	V4T1X0_9ROSI	V4RHQ9	V4T1X0	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	0.961
V4RHQ9_9ROSI	V4T507_9ROSI	V4RHQ9	V4T507	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	W2 domain-containing protein.	0.975
V4RHQ9_9ROSI	V4TBU3_9ROSI	V4RHQ9	V4TBU3	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	S1 motif domain-containing protein.	0.991
V4RHQ9_9ROSI	V4TN72_9ROSI	V4RHQ9	V4TN72	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	eIF2B_5 domain-containing protein.	0.975
V4RHQ9_9ROSI	V4UBH0_9ROSI	V4RHQ9	V4UBH0	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	NTP_transferase domain-containing protein.	0.980
V4RHQ9_9ROSI	V4WBX6_9ROSI	V4RHQ9	V4WBX6	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Uncharacterized protein.	0.946
V4RIW4_9ROSI	V4RYA8_9ROSI	V4RIW4	V4RYA8	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Tr-type G domain-containing protein.	0.980
V4RIW4_9ROSI	V4SMB0_9ROSI	V4RIW4	V4SMB0	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	0.982
V4RIW4_9ROSI	V4STJ4_9ROSI	V4RIW4	V4STJ4	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	0.961
V4RIW4_9ROSI	V4T029_9ROSI	V4RIW4	V4T029	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	eIF2B_5 domain-containing protein.	0.975
V4RIW4_9ROSI	V4T1X0_9ROSI	V4RIW4	V4T1X0	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	0.961
V4RIW4_9ROSI	V4T507_9ROSI	V4RIW4	V4T507	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	W2 domain-containing protein.	0.975
V4RIW4_9ROSI	V4TBU3_9ROSI	V4RIW4	V4TBU3	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	S1 motif domain-containing protein.	0.991
V4RIW4_9ROSI	V4TN72_9ROSI	V4RIW4	V4TN72	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	eIF2B_5 domain-containing protein.	0.975
V4RIW4_9ROSI	V4UBH0_9ROSI	V4RIW4	V4UBH0	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	NTP_transferase domain-containing protein.	0.980
V4RIW4_9ROSI	V4WBX6_9ROSI	V4RIW4	V4WBX6	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Uncharacterized protein.	0.946