(41 nodes) Basal transcription factors network (Citrus clementina)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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protein homology

Your Input:
	V4RJ55_9ROSI	Ubiquitin-like domain-containing protein. (1051 aa)
	V4S2S6_9ROSI	BTP domain-containing protein. (370 aa)
	V4S4V9_9ROSI	General transcription factor IIH subunit. (424 aa)
	V4S5G8_9ROSI	Bromo domain-containing protein. (1594 aa)
	V4SKQ3_9ROSI	Uncharacterized protein. (261 aa)
	V4SLX5_9ROSI	TFIID_20kDa domain-containing protein. (587 aa)
	V4SM53_9ROSI	General transcription factor IIH subunit. (425 aa)
	V4SRY7_9ROSI	Uncharacterized protein. (175 aa)
	V4T1L2_9ROSI	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (106 aa)
	V4T4A6_9ROSI	Uncharacterized protein. (129 aa)
	V4T4S0_9ROSI	BTP domain-containing protein. (361 aa)
	V4T5D6_9ROSI	CYCLIN domain-containing protein; Belongs to the cyclin family. (337 aa)
	V4T8Q2_9ROSI	Uncharacterized protein. (201 aa)
	V4TB80_9ROSI	Uncharacterized protein. (954 aa)
	V4TD27_9ROSI	TFIIF_beta domain-containing protein. (271 aa)
	V4TET0_9ROSI	TAFII55_N domain-containing protein. (219 aa)
	V4THC2_9ROSI	Helicase ATP-binding domain-containing protein. (435 aa)
	V4TJW9_9ROSI	Uncharacterized protein. (130 aa)
	V4TLA7_9ROSI	Peptidase_M1 domain-containing protein. (1354 aa)
	V4TLP5_9ROSI	Uncharacterized protein. (175 aa)
	V4TML9_9ROSI	TFIIB-type domain-containing protein. (312 aa)
	V4TQ52_9ROSI	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (283 aa)
	V4TW95_9ROSI	HTH TFE/IIEalpha-type domain-containing protein. (474 aa)
	V4TZX9_9ROSI	Helicase ATP-binding domain-containing protein. (759 aa)
	V4U4R2_9ROSI	TAF domain-containing protein. (542 aa)
	V4U5P0_9ROSI	TFIIB-type domain-containing protein. (312 aa)
	V4U7P2_9ROSI	BTP domain-containing protein. (280 aa)
	V4UBW0_9ROSI	Uncharacterized protein. (611 aa)
	V4UFR3_9ROSI	Uncharacterized protein. (406 aa)
	V4UFW2_9ROSI	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (538 aa)
	V4UHL6_9ROSI	TAFII28 domain-containing protein. (216 aa)
	V4UHW9_9ROSI	Uncharacterized protein. (510 aa)
	V4UIJ4_9ROSI	Uncharacterized protein. (597 aa)
	V4UKZ3_9ROSI	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (397 aa)
	V4UUX7_9ROSI	TFIID_20kDa domain-containing protein. (537 aa)
	V4V5X3_9ROSI	Uncharacterized protein. (174 aa)
	V4VAJ0_9ROSI	Uncharacterized protein. (186 aa)
	V4VWL5_9ROSI	Uncharacterized protein. (129 aa)
	V4WD26_9ROSI	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (301 aa)
	V4WGF0_9ROSI	TAF domain-containing protein. (534 aa)
	V4WJ86_9ROSI	MAT1 domain-containing protein. (189 aa)

Your Current Organism:

Citrus clementina

NCBI taxonomy Id: 85681
Other names: C. clementina, Citrus deliciosa x Citrus sinensis, clementine

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4RJ55_9ROSI	V4S2S6_9ROSI	V4RJ55	V4S2S6	Ubiquitin-like domain-containing protein.	BTP domain-containing protein.	0.891
V4RJ55_9ROSI	V4S4V9_9ROSI	V4RJ55	V4S4V9	Ubiquitin-like domain-containing protein.	General transcription factor IIH subunit.	0.652
V4RJ55_9ROSI	V4S5G8_9ROSI	V4RJ55	V4S5G8	Ubiquitin-like domain-containing protein.	Bromo domain-containing protein.	0.901
V4RJ55_9ROSI	V4SKQ3_9ROSI	V4RJ55	V4SKQ3	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.705
V4RJ55_9ROSI	V4SLX5_9ROSI	V4RJ55	V4SLX5	Ubiquitin-like domain-containing protein.	TFIID_20kDa domain-containing protein.	0.933
V4RJ55_9ROSI	V4SM53_9ROSI	V4RJ55	V4SM53	Ubiquitin-like domain-containing protein.	General transcription factor IIH subunit.	0.652
V4RJ55_9ROSI	V4SRY7_9ROSI	V4RJ55	V4SRY7	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.901
V4RJ55_9ROSI	V4T1L2_9ROSI	V4RJ55	V4T1L2	Ubiquitin-like domain-containing protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.872
V4RJ55_9ROSI	V4T4A6_9ROSI	V4RJ55	V4T4A6	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.900
V4RJ55_9ROSI	V4T4S0_9ROSI	V4RJ55	V4T4S0	Ubiquitin-like domain-containing protein.	BTP domain-containing protein.	0.891
V4RJ55_9ROSI	V4T5D6_9ROSI	V4RJ55	V4T5D6	Ubiquitin-like domain-containing protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.741
V4RJ55_9ROSI	V4T8Q2_9ROSI	V4RJ55	V4T8Q2	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.901
V4RJ55_9ROSI	V4TB80_9ROSI	V4RJ55	V4TB80	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.972
V4RJ55_9ROSI	V4TD27_9ROSI	V4RJ55	V4TD27	Ubiquitin-like domain-containing protein.	TFIIF_beta domain-containing protein.	0.705
V4RJ55_9ROSI	V4TET0_9ROSI	V4RJ55	V4TET0	Ubiquitin-like domain-containing protein.	TAFII55_N domain-containing protein.	0.973
V4RJ55_9ROSI	V4THC2_9ROSI	V4RJ55	V4THC2	Ubiquitin-like domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.619
V4RJ55_9ROSI	V4TLA7_9ROSI	V4RJ55	V4TLA7	Ubiquitin-like domain-containing protein.	Peptidase_M1 domain-containing protein.	0.976
V4RJ55_9ROSI	V4TLP5_9ROSI	V4RJ55	V4TLP5	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.901
V4RJ55_9ROSI	V4TML9_9ROSI	V4RJ55	V4TML9	Ubiquitin-like domain-containing protein.	TFIIB-type domain-containing protein.	0.832
V4RJ55_9ROSI	V4TQ52_9ROSI	V4RJ55	V4TQ52	Ubiquitin-like domain-containing protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.803