(36 nodes) Mixed, incl. Cellular polysaccharide biosynthetic process, and Methyltransferase domain 25 network (Methylomonas methanica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AEF99586.1	SMART: ATPase, AAA+ type, core; manually curated; KEGG: pph:Ppha_0523 ABC transporter related; PFAM: ABC transporter-like. (591 aa)
	AEF99587.1	KEGG: glo:Glov_3386 hypothetical protein. (612 aa)
	AEF99588.1	N-acetylneuraminate synthase; KEGG: dfe:Dfer_3363 N-acylneuraminate-9-phosphate synthase; PFAM: N-acetylneuraminic acid synthase, N-terminal; SAF domain. (339 aa)
	AEF99590.1	KEGG: gka:GK3120 acylneuraminate cytidylyltransferase; PFAM: Acylneuraminate cytidylyltransferase. (236 aa)
	AEF99591.1	TIGRFAM: N-acetyl sugar amidotransferase; KEGG: lpa:lpa_01155 LPS biosynthesis protein, PseA-like protein. (413 aa)
	AEF99592.1	Methyltransferase type 12; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM). (242 aa)
	AEF99593.1	PFAM: Methyltransferase type 11; KEGG: dfe:Dfer_3803 methyltransferase type 12. (309 aa)
	AEF99594.1	PFAM: Asparagine synthase; Glutamine amidotransferase, class-II; manually curated; KEGG: nde:NIDE2868 asparagine synthase; TIGRFAM: Asparagine synthase, glutamine-hydrolyzing. (621 aa)
	AEF99595.1	Hypothetical protein. (56 aa)
	AEF99596.1	PFAM: Methyltransferase type 12; KEGG: ter:Tery_1348 methyltransferase type 11. (328 aa)
	AEF99597.1	PFAM: Asparagine synthase; Glutamine amidotransferase, class-II; KEGG: gfo:GFO_0573 asparagine synthetase [glutamine-hydrolyzing]. (566 aa)
	AEF99600.1	PFAM: Membrane bound O-acyl transferase, MBOAT; KEGG: tmz:Tmz1t_3262 membrane bound O-acyl transferase MBOAT family protein; Belongs to the membrane-bound acyltransferase family. (517 aa)
	AEF99601.1	KEGG: cno:NT01CX_1555 hypothetical protein. (365 aa)
	AEF99602.1	PFAM: Membrane bound O-acyl transferase, MBOAT; KEGG: dfe:Dfer_1037 membrane bound O-acyl transferase MBOAT family protein; Belongs to the membrane-bound acyltransferase family. (471 aa)
	AEF99603.1	KEGG: dfe:Dfer_1038 hypothetical protein. (289 aa)
	AEF99604.1	KEGG: glo:Glov_3385 radical SAM domain protein. (396 aa)
	AEF99605.1	PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; KEGG: aha:AHA_4154 hypothetical protein. (792 aa)
	AEF99607.1	KEGG: hje:HacjB3_06700 hypothetical protein. (405 aa)
	AEF99608.1	PFAM: Methyltransferase type 11; KEGG: fal:FRAAL2062 putative 3-demethylubiquinone-9 3-O-methyltransferase. (263 aa)
	AEF99609.1	PFAM: Glutamine amidotransferase class-I, C-terminal; KEGG: pfo:Pfl01_5513 glutamine amidotransferase class-I. (227 aa)
	AEF99610.1	PFAM: Nucleotidyl transferase; KEGG: hha:Hhal_0773 nucleotidyl transferase. (262 aa)
	AEF99611.1	Hypothetical protein; KEGG: mpi:Mpet_0778 CDP-alcohol phosphatidyltransferase. (264 aa)
	AEF99612.1	KEGG: gur:Gura_2346 lipopolysaccharide biosynthesis protein-like protein. (354 aa)
	AEF99613.1	KEGG: gbm:Gbem_2571 hypothetical protein. (143 aa)
	AEF99614.1	PFAM: Methyltransferase type 11; KEGG: glo:Glov_3377 methyltransferase type 11. (251 aa)
	AEF99616.1	KEGG: glo:Glov_3376 glycosyl transferase family 2. (390 aa)
	AEF99617.1	TIGRFAM: Methyltransferase FkbM; KEGG: mtb:TBMG_02463 hypothetical protein. (243 aa)
	AEF99618.1	PFAM: Glycosyl transferase, family 2; KEGG: sli:Slin_4932 glycosyl transferase family 2. (286 aa)
	AEF99619.1	KEGG: vsp:VS_0225 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ. (200 aa)
	AEF99620.1	PFAM: Glycosyl transferase, group 1; KEGG: rfr:Rfer_1259 glycosyl transferase, group 1. (374 aa)
	AEF99621.1	PFAM: Glycosyl transferase, family 2; KEGG: net:Neut_0179 glycosyl transferase family protein. (248 aa)
	AEF99622.1	PFAM: Polysaccharide biosynthesis protein; KEGG: meh:M301_1234 polysaccharide biosynthesis protein. (423 aa)
	AEF99623.1	Hypothetical protein; KEGG: aci:ACIAD0083 putative polysaccharide polymerase. (341 aa)
	AEF99624.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: nhl:Nhal_3621 NAD-dependent epimerase/dehydratase. (320 aa)
	AEF99625.1	PFAM: Glycosyl transferase, family 4, conserved region; KEGG: pst:PSPTO_1755 glycosyl transferase, group 4 family protein. (343 aa)
	AEF99626.1	PFAM: Polysaccharide biosynthesis protein CapD-like; KEGG: mca:MCA0903 polysaccharide biosynthesis protein. (609 aa)

Your Current Organism:

Methylomonas methanica

NCBI taxonomy Id: 857087
Other names: M. methanica MC09, Methylomonas methanica MC09, Methylomonas methanica str. MC09, Methylomonas methanica strain MC09

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AEF99586.1	AEF99587.1	Metme_1158	Metme_1159	SMART: ATPase, AAA+ type, core; manually curated; KEGG: pph:Ppha_0523 ABC transporter related; PFAM: ABC transporter-like.	KEGG: glo:Glov_3386 hypothetical protein.	0.518
AEF99586.1	AEF99588.1	Metme_1158	Metme_1160	SMART: ATPase, AAA+ type, core; manually curated; KEGG: pph:Ppha_0523 ABC transporter related; PFAM: ABC transporter-like.	N-acetylneuraminate synthase; KEGG: dfe:Dfer_3363 N-acylneuraminate-9-phosphate synthase; PFAM: N-acetylneuraminic acid synthase, N-terminal; SAF domain.	0.463
AEF99586.1	AEF99590.1	Metme_1158	Metme_1162	SMART: ATPase, AAA+ type, core; manually curated; KEGG: pph:Ppha_0523 ABC transporter related; PFAM: ABC transporter-like.	KEGG: gka:GK3120 acylneuraminate cytidylyltransferase; PFAM: Acylneuraminate cytidylyltransferase.	0.441
AEF99586.1	AEF99591.1	Metme_1158	Metme_1163	SMART: ATPase, AAA+ type, core; manually curated; KEGG: pph:Ppha_0523 ABC transporter related; PFAM: ABC transporter-like.	TIGRFAM: N-acetyl sugar amidotransferase; KEGG: lpa:lpa_01155 LPS biosynthesis protein, PseA-like protein.	0.433
AEF99586.1	AEF99592.1	Metme_1158	Metme_1164	SMART: ATPase, AAA+ type, core; manually curated; KEGG: pph:Ppha_0523 ABC transporter related; PFAM: ABC transporter-like.	Methyltransferase type 12; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM).	0.400
AEF99587.1	AEF99586.1	Metme_1159	Metme_1158	KEGG: glo:Glov_3386 hypothetical protein.	SMART: ATPase, AAA+ type, core; manually curated; KEGG: pph:Ppha_0523 ABC transporter related; PFAM: ABC transporter-like.	0.518
AEF99587.1	AEF99588.1	Metme_1159	Metme_1160	KEGG: glo:Glov_3386 hypothetical protein.	N-acetylneuraminate synthase; KEGG: dfe:Dfer_3363 N-acylneuraminate-9-phosphate synthase; PFAM: N-acetylneuraminic acid synthase, N-terminal; SAF domain.	0.696
AEF99587.1	AEF99590.1	Metme_1159	Metme_1162	KEGG: glo:Glov_3386 hypothetical protein.	KEGG: gka:GK3120 acylneuraminate cytidylyltransferase; PFAM: Acylneuraminate cytidylyltransferase.	0.660
AEF99587.1	AEF99591.1	Metme_1159	Metme_1163	KEGG: glo:Glov_3386 hypothetical protein.	TIGRFAM: N-acetyl sugar amidotransferase; KEGG: lpa:lpa_01155 LPS biosynthesis protein, PseA-like protein.	0.632
AEF99587.1	AEF99592.1	Metme_1159	Metme_1164	KEGG: glo:Glov_3386 hypothetical protein.	Methyltransferase type 12; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM).	0.576
AEF99587.1	AEF99593.1	Metme_1159	Metme_1165	KEGG: glo:Glov_3386 hypothetical protein.	PFAM: Methyltransferase type 11; KEGG: dfe:Dfer_3803 methyltransferase type 12.	0.558
AEF99587.1	AEF99594.1	Metme_1159	Metme_1166	KEGG: glo:Glov_3386 hypothetical protein.	PFAM: Asparagine synthase; Glutamine amidotransferase, class-II; manually curated; KEGG: nde:NIDE2868 asparagine synthase; TIGRFAM: Asparagine synthase, glutamine-hydrolyzing.	0.558
AEF99587.1	AEF99595.1	Metme_1159	Metme_1167	KEGG: glo:Glov_3386 hypothetical protein.	Hypothetical protein.	0.558
AEF99587.1	AEF99596.1	Metme_1159	Metme_1168	KEGG: glo:Glov_3386 hypothetical protein.	PFAM: Methyltransferase type 12; KEGG: ter:Tery_1348 methyltransferase type 11.	0.540
AEF99587.1	AEF99597.1	Metme_1159	Metme_1169	KEGG: glo:Glov_3386 hypothetical protein.	PFAM: Asparagine synthase; Glutamine amidotransferase, class-II; KEGG: gfo:GFO_0573 asparagine synthetase [glutamine-hydrolyzing].	0.413
AEF99588.1	AEF99586.1	Metme_1160	Metme_1158	N-acetylneuraminate synthase; KEGG: dfe:Dfer_3363 N-acylneuraminate-9-phosphate synthase; PFAM: N-acetylneuraminic acid synthase, N-terminal; SAF domain.	SMART: ATPase, AAA+ type, core; manually curated; KEGG: pph:Ppha_0523 ABC transporter related; PFAM: ABC transporter-like.	0.463
AEF99588.1	AEF99587.1	Metme_1160	Metme_1159	N-acetylneuraminate synthase; KEGG: dfe:Dfer_3363 N-acylneuraminate-9-phosphate synthase; PFAM: N-acetylneuraminic acid synthase, N-terminal; SAF domain.	KEGG: glo:Glov_3386 hypothetical protein.	0.696
AEF99588.1	AEF99590.1	Metme_1160	Metme_1162	N-acetylneuraminate synthase; KEGG: dfe:Dfer_3363 N-acylneuraminate-9-phosphate synthase; PFAM: N-acetylneuraminic acid synthase, N-terminal; SAF domain.	KEGG: gka:GK3120 acylneuraminate cytidylyltransferase; PFAM: Acylneuraminate cytidylyltransferase.	0.968
AEF99588.1	AEF99591.1	Metme_1160	Metme_1163	N-acetylneuraminate synthase; KEGG: dfe:Dfer_3363 N-acylneuraminate-9-phosphate synthase; PFAM: N-acetylneuraminic acid synthase, N-terminal; SAF domain.	TIGRFAM: N-acetyl sugar amidotransferase; KEGG: lpa:lpa_01155 LPS biosynthesis protein, PseA-like protein.	0.883
AEF99588.1	AEF99592.1	Metme_1160	Metme_1164	N-acetylneuraminate synthase; KEGG: dfe:Dfer_3363 N-acylneuraminate-9-phosphate synthase; PFAM: N-acetylneuraminic acid synthase, N-terminal; SAF domain.	Methyltransferase type 12; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM).	0.671