STRINGSTRING
HP_0017 HP_0017 HP_0038 HP_0038 HP_0039 HP_0039 HP_0040 HP_0040 HP_0457 HP_0457 HP_0458 HP_0458 HP_0459 HP_0459 HP_0460 HP_0460 HP_0522 HP_0522 HP_0524 HP_0524 HP_0525 HP_0525 HP_0526 HP_0526 HP_0527 HP_0527 HP_0528 HP_0528 HP_0529 HP_0529 HP_0530 HP_0530 HP_0531 HP_0531 cagT cagT HP_0533 HP_0533 cagS cagS HP_0535 HP_0535 HP_0536 HP_0536 HP_0537 HP_0537 HP_0538 HP_0538 HP_0539 HP_0539 HP_0540 HP_0540 HP_0541 HP_0541 HP_0542 HP_0542 HP_0543 HP_0543 cagE cagE HP_0545 HP_0545 HP_0546 HP_0546 HP_1000 HP_1000 HP_1006 HP_1006 HP_1421 HP_1421
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
HP_0017virB4 homolog (virB4); Similar to SP:P17794 PID:154786 PID:39156 percent identity: 25.23; identified by sequence similarity; putative. (787 aa)
HP_0038Predicted coding region HP0038; Hypothetical protein; identified by GeneMark; putative. (245 aa)
HP_0039Predicted coding region HP0039; Hypothetical protein; identified by GeneMark; putative. (90 aa)
HP_0040Predicted coding region HP0040; Hypothetical protein; identified by GeneMark; putative. (247 aa)
HP_0457Predicted coding region HP0457; Hypothetical protein; identified by GeneMark; putative. (87 aa)
HP_0458Predicted coding region HP0458; Hypothetical protein; identified by GeneMark; putative. (78 aa)
HP_0459virB4 homolog (virB4); Similar to SP:P17794 PID:154786 PID:39156 percent identity: 25.28; identified by sequence similarity; putative. (858 aa)
HP_0460Predicted coding region HP0460; Hypothetical protein; identified by GeneMark; putative. (162 aa)
HP_0522Cag pathogenicity island protein (cag3); Similar to GP:1800159 percent identity: 98.13; identified by sequence similarity; putative. (481 aa)
HP_0524Cag pathogenicity island protein (cag5); Similar to GP:1800161 percent identity: 99.06; identified by sequence similarity; putative. (748 aa)
HP_0525virB11 homolog; Part of the Type IV secretion system. Belongs to the GSP E family. (330 aa)
HP_0526Cag pathogenicity island protein (cag6); Similar to GP:1800163 percent identity: 97.49; identified by sequence similarity; putative. (199 aa)
HP_0527Cag pathogenicity island protein (cag7); Similar to GP:1800165 percent identity: 94.57; identified by sequence similarity; putative. (1927 aa)
HP_0528Cag pathogenicity island protein (cag8); Similar to GP:1800166 percent identity: 99.04; identified by sequence similarity; putative. (522 aa)
HP_0529Cag pathogenicity island protein (cag9); Similar to GP:1800167 percent identity: 98.88; identified by sequence similarity; putative. (535 aa)
HP_0530Cag pathogenicity island protein (cag10); Similar to GP:1800168 percent identity: 98.41; identified by sequence similarity; putative. (252 aa)
HP_0531Cag pathogenicity island protein (cag11); Similar to GP:1800169 percent identity: 97.20; identified by sequence similarity; putative. (218 aa)
cagTCag pathogenicity island protein (cag12); Similar to GP:1752681 percent identity: 98.93; identified by sequence similarity; putative. (280 aa)
HP_0533Predicted coding region HP0533; Hypothetical protein; identified by GeneMark; putative. (29 aa)
cagSCag pathogenicity island protein (cag13); Similar to GP:1752682 percent identity: 97.96; identified by sequence similarity; putative. (196 aa)
HP_0535Cag pathogenicity island protein (cag14); Similar to GP:1752685 percent identity: 97.62; identified by sequence similarity; putative. (126 aa)
HP_0536Cag pathogenicity island protein (cag15); Similar to GP:1752687 percent identity: 96.36; identified by sequence similarity; putative. (114 aa)
HP_0537Cag pathogenicity island protein (cag16); Similar to GP:1752689 percent identity: 98.94; identified by sequence similarity; putative. (376 aa)
HP_0538Cag pathogenicity island protein (cag17); Similar to GP:1752690 percent identity: 95.27; identified by sequence similarity; putative. (306 aa)
HP_0539Cag pathogenicity island protein (cag18); Similar to GP:1752691 percent identity: 98.73; identified by sequence similarity; putative. (237 aa)
HP_0540Cag pathogenicity island protein (cag19); Similar to GP:1752692 percent identity: 99.48; identified by sequence similarity; putative. (381 aa)
HP_0541Cag pathogenicity island protein (cag20); Similar to GP:1752693 percent identity: 97.84; identified by sequence similarity; putative. (370 aa)
HP_0542Cag pathogenicity island protein (cag21); Similar to GP:1752694 percent identity: 97.89; identified by sequence similarity; putative. (142 aa)
HP_0543Cag pathogenicity island protein (cag22); Similar to GP:1752695 percent identity: 95.52; identified by sequence similarity; putative. (268 aa)
cagECag pathogenicity island protein (cag23); Involved in DNA transfer. Required for induction of IL-8 in gastric epithelial cells. (983 aa)
HP_0545Cag pathogenicity island protein (cag24); Similar to GP:1752697 percent identity: 98.54; identified by sequence similarity; putative. (207 aa)
HP_0546Cag pathogenicity island protein (cag25); Similar to GP:1752698 percent identity: 95.65; identified by sequence similarity; putative. (115 aa)
HP_1000PARA protein; Similar to SP:P07175 GB:X05121 PID:142267 PID:39112 percent identity: 29.73; identified by sequence similarity; putative. (218 aa)
HP_1006Conjugal transfer protein (traG); Similar to PID:1103907 SP:Q44346 percent identity: 27.33; identified by sequence similarity; putative. (177 aa)
HP_1421Conjugative transfer regulon protein (trbB); Similar to GP:1800162 percent identity: 30.69; identified by sequence similarity; putative. (304 aa)
Your Current Organism:
Helicobacter pylori
NCBI taxonomy Id: 85962
Other names: H. pylori 26695, Helicobacter pylori (strain 26695), Helicobacter pylori 26695, Helicobacter pylori ATCC 700392, Helicobacter pylori KE26695, Helicobacter pylori str. 26695, Helicobacter pylori strain 26695
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