STRINGSTRING
ALG05604.1 ALG05604.1 nth nth ALG05909.1 ALG05909.1 ALG06544.1 ALG06544.1 lig lig ALG06617.1 ALG06617.1 ALG06668.1 ALG06668.1 ALG07279.1 ALG07279.1 ALG07317.1 ALG07317.1 ALG07435.1 ALG07435.1 ALG14742.1 ALG14742.1 ALG14808.1 ALG14808.1 ALG08903.1 ALG08903.1 ligA ligA ALG09384.1 ALG09384.1 ALG11584.1 ALG11584.1 polA polA ALG12869.1 ALG12869.1 mutM mutM ung ung ligA-2 ligA-2 ALG15631.1 ALG15631.1 ALG14382.1 ALG14382.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ALG05604.1DNA lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPG family. (287 aa)
nthEndonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (250 aa)
ALG05909.1Adenine glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)
ALG06544.1uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
ligDNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. (500 aa)
ALG06617.1AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (479 aa)
ALG06668.13-methyladenine DNA glycosylase; Constitutive, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine; Derived by automated computational analysis using gene prediction method: Protein Homology. (192 aa)
ALG07279.1AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (422 aa)
ALG07317.13'-5' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (552 aa)
ALG07435.1DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPG family. (269 aa)
ALG14742.1Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)
ALG14808.1DNA-3-methyladenine glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA glycosylase MPG family. (200 aa)
ALG08903.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)
ligADNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. (663 aa)
ALG09384.1uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (191 aa)
ALG11584.1DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (167 aa)
polADNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (903 aa)
ALG12869.1DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)
mutM5-hydroxymethyluracil DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (285 aa)
unguracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. (224 aa)
ligA-2Aromatic ring-opening dioxygenase LigA; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. (706 aa)
ALG15631.1Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
ALG14382.1Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
Your Current Organism:
Kibdelosporangium phytohabitans
NCBI taxonomy Id: 860235
Other names: CCTCC AA 2010001, K. phytohabitans, KCTC 19775, Kibdelosporangium phytohabitans Xing et al. 2012
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