(7 nodes) Mixed, incl. YebC-like, and Manganese containing catalase network (Bacillus subtilis natto)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	yeeI	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)
	AMK74641.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (173 aa)
	yezE	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (194 aa)
	AMK71322.1	Spore coat protein CotJA; Derived by automated computational analysis using gene prediction method: Protein Homology. (82 aa)
	AMK71323.1	Spore coat protein CotJB; Derived by automated computational analysis using gene prediction method: Protein Homology. (87 aa)
	cotJC	Spore coat protein CotJC; Derived by automated computational analysis using gene prediction method: Protein Homology. (189 aa)
	yesJ	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (180 aa)

Your Current Organism:

Bacillus subtilis natto

NCBI taxonomy Id: 86029
Other names: B. subtilis subsp. natto, Bacillus subtilis subsp. natto, Bacillus subtilis var. natto

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMK71322.1	AMK71323.1	AWV81_03865	AWV81_03870	Spore coat protein CotJA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spore coat protein CotJB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AMK71322.1	AMK74641.1	AWV81_03865	AWV81_03855	Spore coat protein CotJA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
AMK71322.1	cotJC	AWV81_03865	AWV81_03875	Spore coat protein CotJA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spore coat protein CotJC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
AMK71322.1	yesJ	AWV81_03865	AWV81_03880	Spore coat protein CotJA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.600
AMK71322.1	yezE	AWV81_03865	AWV81_03860	Spore coat protein CotJA; Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.495
AMK71323.1	AMK71322.1	AWV81_03870	AWV81_03865	Spore coat protein CotJB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spore coat protein CotJA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AMK71323.1	AMK74641.1	AWV81_03870	AWV81_03855	Spore coat protein CotJB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
AMK71323.1	cotJC	AWV81_03870	AWV81_03875	Spore coat protein CotJB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spore coat protein CotJC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AMK71323.1	yesJ	AWV81_03870	AWV81_03880	Spore coat protein CotJB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.529
AMK71323.1	yezE	AWV81_03870	AWV81_03860	Spore coat protein CotJB; Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.457
AMK74641.1	AMK71322.1	AWV81_03855	AWV81_03865	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spore coat protein CotJA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
AMK74641.1	AMK71323.1	AWV81_03855	AWV81_03870	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spore coat protein CotJB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
AMK74641.1	yeeI	AWV81_03855	AWV81_03850	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
AMK74641.1	yezE	AWV81_03855	AWV81_03860	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.686
cotJC	AMK71322.1	AWV81_03875	AWV81_03865	Spore coat protein CotJC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spore coat protein CotJA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
cotJC	AMK71323.1	AWV81_03875	AWV81_03870	Spore coat protein CotJC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spore coat protein CotJB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
cotJC	yesJ	AWV81_03875	AWV81_03880	Spore coat protein CotJC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.551
cotJC	yezE	AWV81_03875	AWV81_03860	Spore coat protein CotJC; Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
yeeI	AMK74641.1	AWV81_03850	AWV81_03855	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
yeeI	yezE	AWV81_03850	AWV81_03860	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.416