21 items (Bacillus subtilis natto) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	glnH	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family. (273 aa)
	yunD	Bifunctional metallophosphatase/5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family. (462 aa)
	fhuD	Iron(3+)-hydroxamate-binding protein fhuD; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)
	feuA	Iron-uptake system-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
	yclQ	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
	dctB	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa)
	cotA	Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (513 aa)
	cpdB	2',3'-cyclic-nucleotide 2'-phosphodiesterase; In Escherichia coli this is a periplasmic enzyme while in gram positive organisms it may be anchored at the cell surface; this protein appears to consist of a dimer fusion; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology. (1415 aa)
	yfiY	Iron siderophore-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
	yhcR	Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (1195 aa)
	AMK71659.1	Iron-dicitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)
	yhjP	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (575 aa)
	appA	Peptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (543 aa)
	oppA	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (545 aa)
	dppE	Oligopeptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (543 aa)
	cwlC	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)
	ctpA	Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S41A family. (466 aa)
	yvgL	Molybdenum ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
	yvjB	Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S41A family. (480 aa)
	yxeB	Iron(3+)-hydroxamate-binding protein yxeB; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
	yyaE	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (667 aa)

Your Current Organism:

Bacillus subtilis natto

NCBI taxonomy Id: 86029
Other names: B. subtilis subsp. natto, Bacillus subtilis subsp. natto, Bacillus subtilis var. natto

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMK71659.1	fhuD	AWV81_05765	AWV81_17290	Iron-dicitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron(3+)-hydroxamate-binding protein fhuD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.701
AMK71659.1	yclQ	AWV81_05765	AWV81_02195	Iron-dicitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.555
AMK71659.1	yfiY	AWV81_05765	AWV81_04600	Iron-dicitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron siderophore-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.527
AMK71659.1	yxeB	AWV81_05765	AWV81_21150	Iron-dicitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron(3+)-hydroxamate-binding protein yxeB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.578
appA	dppE	AWV81_06265	AWV81_07280	Peptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oligopeptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.588
appA	oppA	AWV81_06265	AWV81_06290	Peptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.935
cpdB	yunD	AWV81_04280	AWV81_16725	2',3'-cyclic-nucleotide 2'-phosphodiesterase; In Escherichia coli this is a periplasmic enzyme while in gram positive organisms it may be anchored at the cell surface; this protein appears to consist of a dimer fusion; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bifunctional metallophosphatase/5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family.	0.922
dppE	appA	AWV81_07280	AWV81_06265	Oligopeptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.588
dppE	oppA	AWV81_07280	AWV81_06290	Oligopeptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.421
feuA	fhuD	AWV81_01055	AWV81_17290	Iron-uptake system-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron(3+)-hydroxamate-binding protein fhuD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.703
feuA	yfiY	AWV81_01055	AWV81_04600	Iron-uptake system-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron siderophore-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.552
feuA	yxeB	AWV81_01055	AWV81_21150	Iron-uptake system-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron(3+)-hydroxamate-binding protein yxeB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.566
fhuD	AMK71659.1	AWV81_17290	AWV81_05765	Iron(3+)-hydroxamate-binding protein fhuD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron-dicitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.701
fhuD	feuA	AWV81_17290	AWV81_01055	Iron(3+)-hydroxamate-binding protein fhuD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron-uptake system-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.703
fhuD	yclQ	AWV81_17290	AWV81_02195	Iron(3+)-hydroxamate-binding protein fhuD; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.533
fhuD	yfiY	AWV81_17290	AWV81_04600	Iron(3+)-hydroxamate-binding protein fhuD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron siderophore-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.675
fhuD	yxeB	AWV81_17290	AWV81_21150	Iron(3+)-hydroxamate-binding protein fhuD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron(3+)-hydroxamate-binding protein yxeB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.637
oppA	appA	AWV81_06290	AWV81_06265	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.935
oppA	dppE	AWV81_06290	AWV81_07280	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oligopeptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.421
yclQ	AMK71659.1	AWV81_02195	AWV81_05765	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron-dicitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.555