(5 nodes) Double Cache domain 1 network (Bacillus subtilis natto)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mcpA	Chemotaxis protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (661 aa)
	kinD	Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (500 aa)
	yesM	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (577 aa)
	mcpB	Chemotaxis protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (662 aa)
	mcpC	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (655 aa)

Your Current Organism:

Bacillus subtilis natto

NCBI taxonomy Id: 86029
Other names: B. subtilis subsp. natto, Bacillus subtilis subsp. natto, Bacillus subtilis var. natto

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
mcpA	mcpB	AWV81_16040	AWV81_16050	Chemotaxis protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
mcpA	mcpC	AWV81_16040	AWV81_07810	Chemotaxis protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.793
mcpB	mcpA	AWV81_16050	AWV81_16040	Chemotaxis protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
mcpB	mcpC	AWV81_16050	AWV81_07810	Chemotaxis protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.712
mcpC	mcpA	AWV81_07810	AWV81_16040	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.793
mcpC	mcpB	AWV81_07810	AWV81_16050	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.712