10 items (Cladophialophora carrionii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CLCR_05426	Putative Rho guanyl nucleotide exchange factor. (947 aa)
	CLCR_06358	Rho GDP-dissociation inhibitor. (170 aa)
	CLCR_05770	Uncharacterized protein. (510 aa)
	CLCR_01685	Uncharacterized protein. (258 aa)
	cdc42	Cell division control protein 42 like protein. (236 aa)
	CLCR_03807	RhoGAP domain containing protein. (1228 aa)
	CLCR_06631	Non-specific serine/threonine protein kinase. (882 aa)
	CLCR_08224	Protein kinase activator Bem1. (615 aa)
	rac1A	Rho-related protein rac1A. (178 aa)
	ste20	Non-specific serine/threonine protein kinase. (875 aa)

Your Current Organism:

Cladophialophora carrionii

NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLCR_01685	CLCR_03807	A0A1C1CAZ1	A0A1C1CI96	Uncharacterized protein.	RhoGAP domain containing protein.	0.960
CLCR_01685	CLCR_05426	A0A1C1CAZ1	A0A1C1C715	Uncharacterized protein.	Putative Rho guanyl nucleotide exchange factor.	0.499
CLCR_01685	CLCR_05770	A0A1C1CAZ1	A0A1C1CAA6	Uncharacterized protein.	Uncharacterized protein.	0.657
CLCR_01685	CLCR_06631	A0A1C1CAZ1	A0A1C1CQG8	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.654
CLCR_01685	CLCR_08224	A0A1C1CAZ1	A0A1C1CRF1	Uncharacterized protein.	Protein kinase activator Bem1.	0.877
CLCR_01685	cdc42	A0A1C1CAZ1	A0A1C1CCP6	Uncharacterized protein.	Cell division control protein 42 like protein.	0.870
CLCR_01685	rac1A	A0A1C1CAZ1	A0A1C1CXB0	Uncharacterized protein.	Rho-related protein rac1A.	0.852
CLCR_01685	ste20	A0A1C1CAZ1	A0A1C1CYY9	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.654
CLCR_03807	CLCR_01685	A0A1C1CI96	A0A1C1CAZ1	RhoGAP domain containing protein.	Uncharacterized protein.	0.960
CLCR_03807	CLCR_05426	A0A1C1CI96	A0A1C1C715	RhoGAP domain containing protein.	Putative Rho guanyl nucleotide exchange factor.	0.960
CLCR_03807	CLCR_05770	A0A1C1CI96	A0A1C1CAA6	RhoGAP domain containing protein.	Uncharacterized protein.	0.998
CLCR_03807	CLCR_06358	A0A1C1CI96	A0A1C1CA45	RhoGAP domain containing protein.	Rho GDP-dissociation inhibitor.	0.514
CLCR_03807	CLCR_06631	A0A1C1CI96	A0A1C1CQG8	RhoGAP domain containing protein.	Non-specific serine/threonine protein kinase.	0.999
CLCR_03807	CLCR_08224	A0A1C1CI96	A0A1C1CRF1	RhoGAP domain containing protein.	Protein kinase activator Bem1.	0.810
CLCR_03807	cdc42	A0A1C1CI96	A0A1C1CCP6	RhoGAP domain containing protein.	Cell division control protein 42 like protein.	0.998
CLCR_03807	rac1A	A0A1C1CI96	A0A1C1CXB0	RhoGAP domain containing protein.	Rho-related protein rac1A.	0.998
CLCR_03807	ste20	A0A1C1CI96	A0A1C1CYY9	RhoGAP domain containing protein.	Non-specific serine/threonine protein kinase.	0.999
CLCR_05426	CLCR_01685	A0A1C1C715	A0A1C1CAZ1	Putative Rho guanyl nucleotide exchange factor.	Uncharacterized protein.	0.499
CLCR_05426	CLCR_03807	A0A1C1C715	A0A1C1CI96	Putative Rho guanyl nucleotide exchange factor.	RhoGAP domain containing protein.	0.960
CLCR_05426	CLCR_05770	A0A1C1C715	A0A1C1CAA6	Putative Rho guanyl nucleotide exchange factor.	Uncharacterized protein.	0.683