STRINGSTRING
mtr4 mtr4 UTP6 UTP6 CLCR_05626 CLCR_05626 CLCR_01507 CLCR_01507 spb1 spb1 CLCR_06248 CLCR_06248 esf1 esf1 dbp10 dbp10 Exosc1 Exosc1 CLCR_05800 CLCR_05800 CLCR_06127 CLCR_06127 rrp5 rrp5 LIG4 LIG4 RPB8 RPB8 dbp7 dbp7 Pop4 Pop4 CLCR_06354 CLCR_06354 RPA12 RPA12 ebp2 ebp2 CLCR_05398 CLCR_05398 CLCR_06188 CLCR_06188 CLCR_05885 CLCR_05885 CLCR_06105 CLCR_06105 CLCR_05592 CLCR_05592 CLCR_05849 CLCR_05849 CLCR_05530 CLCR_05530 CLCR_06297 CLCR_06297 CLCR_05582 CLCR_05582 rrb1 rrb1 CLCR_05600 CLCR_05600 esf2 esf2 CLCR_06110 CLCR_06110 CLCR_06346 CLCR_06346 HDA1 HDA1 CLCR_05803 CLCR_05803 DBP4 DBP4 CLCR_06222 CLCR_06222 CLCR_05465 CLCR_05465 snu13 snu13 SAS10 SAS10 CLCR_06193 CLCR_06193 CLCR_00542 CLCR_00542 DIN4 DIN4 NIP7 NIP7 CLCR_00581 CLCR_00581 CLCR_00691 CLCR_00691 CLCR_00141 CLCR_00141 CLCR_01048 CLCR_01048 CLCR_01223 CLCR_01223 CLCR_01026 CLCR_01026 ENP2 ENP2 nsa2 nsa2 CLCR_01067 CLCR_01067 CLCR_01311 CLCR_01311 PNO1 PNO1 NOP7 NOP7 CLCR_00447 CLCR_00447 ytm1 ytm1 RRS1 RRS1 CLCR_00419 CLCR_00419 CLCR_00062 CLCR_00062 CLCR_01573 CLCR_01573 BRX1 BRX1 IMP4 IMP4 CLCR_01460 CLCR_01460 CLCR_01629 CLCR_01629 CLCR_01691 CLCR_01691 rrp45 rrp45 tgs1 tgs1 CLCR_01323 CLCR_01323 UTP18 UTP18 dbp9 dbp9 dis3 dis3 CLCR_02034 CLCR_02034 CLCR_02093 CLCR_02093 CLCR_01853 CLCR_01853 CLCR_01808 CLCR_01808 FCF1 FCF1 RSA4 RSA4 NAT10 NAT10 NEP1 NEP1 CLCR_02427 CLCR_02427 nop58 nop58 spb4 spb4 RPB5 RPB5 sof1 sof1 CLCR_02494 CLCR_02494 rpa1 rpa1 pac1 pac1 RRP3 RRP3 rrp6 rrp6 CLCR_03441 CLCR_03441 NOP13 NOP13 CLCR_03501 CLCR_03501 sgd1 sgd1 CLCR_03644 CLCR_03644 zuo1 zuo1 CLCR_03319 CLCR_03319 CLCR_03567 CLCR_03567 CLCR_03270 CLCR_03270 CLCR_03746 CLCR_03746 CLCR_03615 CLCR_03615 cnd1 cnd1 HAS1 HAS1 CLCR_03422 CLCR_03422 CLCR_03801 CLCR_03801 CLCR_04162 CLCR_04162 CLCR_03838 CLCR_03838 CLCR_04368 CLCR_04368 CLCR_04187 CLCR_04187 CLCR_03869 CLCR_03869 CLCR_03842 CLCR_03842 LSM4 LSM4 CLCR_03952 CLCR_03952 CLCR_04012 CLCR_04012 CLCR_04360 CLCR_04360 DIM1 DIM1 CLCR_04220 CLCR_04220 fal1 fal1 CLCR_04287 CLCR_04287 CLCR_04290 CLCR_04290 CDC14 CDC14 CLCR_05136 CLCR_05136 fen1 fen1 CLCR_04930 CLCR_04930 tif6 tif6 CLCR_05249 CLCR_05249 Lsm2 Lsm2 RPS13 RPS13 CLCR_05024 CLCR_05024 nop12 nop12 cgrA cgrA RPC40 RPC40 TOP1 TOP1 imp3 imp3 CLCR_04791 CLCR_04791 SKI6 SKI6 CLCR_07445 CLCR_07445 aphA aphA utp10 utp10 NOC2 NOC2 CLCR_06985 CLCR_06985 CLCR_06558 CLCR_06558 CLCR_06656 CLCR_06656 CLCR_07249 CLCR_07249 CLCR_07207 CLCR_07207 CLCR_06592 CLCR_06592 CLCR_07175 CLCR_07175 NUG1 NUG1 CLCR_07113 CLCR_07113 ROK1 ROK1 mrd1 mrd1 CLCR_06588 CLCR_06588 CLCR_07363 CLCR_07363 ECM16 ECM16 tit1 tit1 cbf5 cbf5 CLCR_07424 CLCR_07424 CLCR_06732 CLCR_06732 UTP25 UTP25 CLCR_07200 CLCR_07200 CLCR_07306 CLCR_07306 CLCR_07099 CLCR_07099 CLCR_07778 CLCR_07778 CLCR_08664 CLCR_08664 KRR1 KRR1 nop56 nop56 CLCR_08431 CLCR_08431 CLCR_08051 CLCR_08051 CLCR_08441 CLCR_08441 CLCR_08728 CLCR_08728 CLCR_08436 CLCR_08436 CLCR_07960 CLCR_07960 CLCR_07973 CLCR_07973 NOG1 NOG1 sda1 sda1 CLCR_08071 CLCR_08071 puf6 puf6 RPC10 RPC10 kri1 kri1 CLCR_08095 CLCR_08095 CLCR_08910 CLCR_08910 CLCR_08963 CLCR_08963 MPP10 MPP10 CLCR_07970 CLCR_07970 CLCR_08717 CLCR_08717 CLCR_08319 CLCR_08319 CLCR_08501 CLCR_08501 RRP40 RRP40 rlp24 rlp24 CLCR_10172 CLCR_10172 CUTC CUTC CLCR_09511 CLCR_09511 nob1 nob1 CLCR_09573 CLCR_09573 CLCR_09706 CLCR_09706 utp15 utp15 rrp4 rrp4 NOP9 NOP9 CLCR_10550 CLCR_10550 CLCR_09758 CLCR_09758 CLCR_10034 CLCR_10034 CLCR_10699 CLCR_10699 CLCR_09955 CLCR_09955 CLCR_09470 CLCR_09470 NOP16 NOP16 prh1 prh1 MAK5 MAK5 CLCR_09509 CLCR_09509 CLCR_09451 CLCR_09451 erb1 erb1 CLCR_10799 CLCR_10799 bms1 bms1 CLCR_10478 CLCR_10478 DBP3 DBP3 CLCR_10137 CLCR_10137 DRS1 DRS1 NOP14 NOP14 bimG bimG CLCR_00299 CLCR_00299 CLCR_00231 CLCR_00231 CLCR_00293 CLCR_00293 utp7 utp7 CLCR_00878 CLCR_00878 utp13 utp13 CLCR_00963 CLCR_00963 CLCR_00862 CLCR_00862 CLCR_00818 CLCR_00818 BUD23 BUD23 jip5 jip5 rpc19 rpc19 hus1 hus1 LOC1 LOC1 CLCR_02961 CLCR_02961 CLCR_02812 CLCR_02812 CLCR_03046 CLCR_03046 CLCR_02786 CLCR_02786 fcf2 fcf2 dbp8 dbp8 mak16 mak16
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
mtr4ATP-dependent RNA helicase mtr4. (1010 aa)
UTP6U3 small nucleolar RNA-associated protein 6. (392 aa)
CLCR_05626Uncharacterized protein. (646 aa)
CLCR_01507BRCT domain-containing protein. (489 aa)
spb1AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (833 aa)
CLCR_06248Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (250 aa)
esf1Pre-rRNA-processing protein esf1. (756 aa)
dbp10ATP-dependent RNA helicase DBP10. (942 aa)
Exosc1Exosome complex component CSL4. (209 aa)
CLCR_05800Uncharacterized protein. (470 aa)
CLCR_06127Putative urease accessory protein. (315 aa)
rrp5rRNA biogenesis protein rrp5. (1814 aa)
LIG4DNA ligase. (1116 aa)
RPB8DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (143 aa)
dbp7ATP-dependent RNA helicase dbp7; Belongs to the DEAD box helicase family. (879 aa)
Pop4Ribonuclease P protein subunit. (253 aa)
CLCR_06354SRP9-21 domain-containing protein. (183 aa)
RPA12DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (123 aa)
ebp2Putative rRNA-processing protein ebp2. (391 aa)
CLCR_05398CBF domain-containing protein. (1128 aa)
CLCR_06188NAD dependent epimerase/dehydratase. (281 aa)
CLCR_05885Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (450 aa)
CLCR_061053' exoribonuclease family protein. (312 aa)
CLCR_05592RNA recognition motif containing protein. (667 aa)
CLCR_05849Uncharacterized protein. (328 aa)
CLCR_05530Uncharacterized protein. (712 aa)
CLCR_06297Ribonucleases P/MRP protein subunit POP5. (217 aa)
CLCR_05582Uncharacterized protein. (663 aa)
rrb1Ribosome assembly protein rrb1. (511 aa)
CLCR_05600RNA polymerase I-specific transcription initiation factor RRN3 family protein. (661 aa)
esf2Pre-rRNA-processing protein esf2. (364 aa)
CLCR_06110Uncharacterized protein. (326 aa)
CLCR_06346Uncharacterized protein. (186 aa)
HDA1Histone deacetylase HDA1. (491 aa)
CLCR_05803Uncharacterized protein. (412 aa)
DBP4RNA helicase. (907 aa)
CLCR_06222Uncharacterized protein. (267 aa)
CLCR_05465Uncharacterized protein. (864 aa)
snu13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (126 aa)
SAS10Something about silencing protein 10. (581 aa)
CLCR_06193U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (277 aa)
CLCR_00542Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (4857 aa)
DIN42-oxoisovalerate dehydrogenase subunit beta 2, mitochondrial. (391 aa)
NIP760S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (186 aa)
CLCR_00581Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family. (716 aa)
CLCR_00691Uncharacterized protein. (283 aa)
CLCR_00141H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (128 aa)
CLCR_01048DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (1152 aa)
CLCR_01223Uncharacterized protein. (321 aa)
CLCR_01026Putative HEAT repeat protein (DRIM). (2589 aa)
ENP2Ribosome biogenesis protein ENP2. (725 aa)
nsa2Ribosome biogenesis protein nsa2. (261 aa)
CLCR_01067Utp14 protein. (947 aa)
CLCR_01311Uncharacterized protein. (164 aa)
PNO1Pre-rRNA-processing protein PNO1. (264 aa)
NOP7Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (674 aa)
CLCR_0044760S ribosome biogenesis protein Mak11. (507 aa)
ytm1Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (463 aa)
RRS1Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (231 aa)
CLCR_00419Uncharacterized protein. (525 aa)
CLCR_00062Putative exosome-associated protein. (275 aa)
CLCR_01573Lactonohydrolase. (425 aa)
BRX1Ribosome biogenesis protein BRX1. (337 aa)
IMP4U3 small nucleolar ribonucleoprotein IMP4. (296 aa)
CLCR_01460AT hook motif family protein. (655 aa)
CLCR_01629Uncharacterized protein. (348 aa)
CLCR_01691SWIM-type domain-containing protein. (268 aa)
rrp45Exosome complex component rrp45. (291 aa)
tgs1Trimethylguanosine synthase. (274 aa)
CLCR_01323Uncharacterized protein. (160 aa)
UTP18U3 small nucleolar RNA-associated protein 18. (590 aa)
dbp9ATP-dependent RNA helicase dbp9. (604 aa)
dis3Exosome complex exonuclease dis3; Belongs to the RNR ribonuclease family. (1006 aa)
CLCR_02034SWIB/MDM2 domain protein. (274 aa)
CLCR_02093Protein required for cell viability Rrp17. (225 aa)
CLCR_01853Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (590 aa)
CLCR_01808U3 small nucleolar RNA-associated protein. (1058 aa)
FCF1rRNA-processing protein FCF1. (194 aa)
RSA4Ribosome assembly protein 4. (527 aa)
NAT10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1115 aa)
NEP1Ribosomal RNA small subunit methyltransferase NEP1. (260 aa)
CLCR_02427Brix domain-containing protein. (464 aa)
nop58Nucleolar protein 58. (667 aa)
spb4RNA helicase. (629 aa)
RPB5DNA-directed RNA polymerases I, II, and III subunit RPABC1. (238 aa)
sof1Protein sof1. (398 aa)
CLCR_02494Uncharacterized protein. (385 aa)
rpa1DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1754 aa)
pac1Double-strand-specific pac1 ribonuclease. (340 aa)
RRP3ATP-dependent rRNA helicase RRP3; Belongs to the DEAD box helicase family. (472 aa)
rrp6Exosome complex exonuclease rrp6. (829 aa)
CLCR_03441DNA polymerase sigma subunit. (556 aa)
NOP13Nucleolar protein 13. (370 aa)
CLCR_03501Uncharacterized protein. (439 aa)
sgd1Suppressor of glycerol defect protein 1. (863 aa)
CLCR_03644FRG1-like family protein. (285 aa)
zuo1Zuotin. (499 aa)
CLCR_03319Uncharacterized protein. (783 aa)
CLCR_03567Uncharacterized protein. (389 aa)
CLCR_03270U3 small nucleolar RNA-associated protein 22. (1150 aa)
CLCR_03746Uncharacterized protein. (134 aa)
CLCR_03615Putative HMG box protein. (316 aa)
cnd1Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. (1179 aa)
HAS1RNA helicase. (623 aa)
CLCR_0342260S ribosome biogenesis protein Rrp14. (538 aa)
CLCR_03801Urb2 domain-containing protein. (1526 aa)
CLCR_04162Putative ribosome biogenesis protein. (388 aa)
CLCR_03838Uncharacterized protein. (1010 aa)
CLCR_04368Uncharacterized protein. (157 aa)
CLCR_04187LisH domain-containing protein. (382 aa)
CLCR_03869Ribosome biogenesis protein tsr1 like protein. (825 aa)
CLCR_03842Putative small nucleolar ribonucleoprotein complex component (Utp5). (959 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (146 aa)
CLCR_03952Signal recognition particle subunit SRP68; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP68 family. (641 aa)
CLCR_04012Putative vesicle-mediated transport protein Bfr2/Che-1. (554 aa)
CLCR_04360DUF1168 domain protein. (213 aa)
DIM1rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (403 aa)
CLCR_04220Ribosomal_L7Ae domain-containing protein. (318 aa)
fal1ATP-dependent RNA helicase fal1; Belongs to the DEAD box helicase family. (399 aa)
CLCR_04287CBF domain-containing protein. (293 aa)
CLCR_04290RNase_PH domain-containing protein. (290 aa)
CDC14Tyrosine-protein phosphatase CDC14. (651 aa)
CLCR_05136Methyltransf_25 domain-containing protein. (242 aa)
fen1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (395 aa)
CLCR_04930Ribosome production factor 2 like protein. (391 aa)
tif6Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (248 aa)
CLCR_05249DNA-directed RNA polymerases I, II, and III. (107 aa)
Lsm2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
RPS1340S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (174 aa)
CLCR_05024Putative ribonuclease P protein subunit 3. (324 aa)
nop12Nucleolar protein 12. (522 aa)
cgrArRNA-processing protein; Involved in nucleolar integrity and required for processing of the pre-rRNA for the 60S ribosome subunit. Belongs to the CGR1 family. (135 aa)
RPC40DNA-directed RNA polymerases I and III subunit RPAC1. (373 aa)
TOP1DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (916 aa)
imp3U3 small nucleolar ribonucleoprotein imp3. (188 aa)
CLCR_04791Uncharacterized protein. (519 aa)
SKI6Exosome complex component SKI6. (258 aa)
CLCR_07445Ribosomal small subunit assembly protein. (302 aa)
aphAAcetylpolyamine aminohydrolase. (364 aa)
utp10U3 small nucleolar RNA-associated protein 10. (1896 aa)
NOC2Nucleolar complex protein 2. (707 aa)
CLCR_06985Putative methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (525 aa)
CLCR_06558Uncharacterized protein. (1396 aa)
CLCR_06656ATP-dependent RNA helicase dbp6. (878 aa)
CLCR_07249Putative isopenicillin N synthetase; Belongs to the iron/ascorbate-dependent oxidoreductase family. (388 aa)
CLCR_07207Lactonohydrolase. (410 aa)
CLCR_06592WD_REPEATS_REGION domain-containing protein. (1109 aa)
CLCR_07175Putative RNA polymerase I subunit Rpa43. (446 aa)
NUG1Nuclear GTP-binding protein NUG1. (545 aa)
CLCR_07113rRNA 2'-O-methyltransferase fibrillarin. (324 aa)
ROK1ATP-dependent RNA helicase ROK1. (683 aa)
mrd1Multiple RNA-binding domain-containing protein 1. (757 aa)
CLCR_06588Ribonuclease P. (1110 aa)
CLCR_07363RNase_PH domain-containing protein. (353 aa)
ECM16Putative ATP-dependent RNA helicase DHR1. (1248 aa)
tit1tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37; Belongs to the IPP transferase family. (463 aa)
cbf5Centromere/microtubule-binding protein cbf5. (501 aa)
CLCR_07424Uncharacterized protein. (318 aa)
CLCR_06732Poly [ADP-ribose] polymerase. (698 aa)
UTP25U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (738 aa)
CLCR_0720025S rRNA adenine-N(1) methyltransferase; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of an adenine present in helix 65 in 25S rRNA; Belongs to the BMT2 family. (435 aa)
CLCR_07306DUF2431 domain-containing protein. (381 aa)
CLCR_07099DNA-directed RNA polymerase I subunit A49. (474 aa)
CLCR_07778Uncharacterized protein. (112 aa)
CLCR_08664Putative RNA 3'-terminal phosphate cyclase-like protein. (407 aa)
KRR1KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (339 aa)
nop56Nucleolar protein 56. (517 aa)
CLCR_08431Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family. (522 aa)
CLCR_08051Topoisomerase family protein TRF4. (751 aa)
CLCR_08441Putative chromosome segregation protein (Pcs1). (519 aa)
CLCR_08728Uncharacterized protein. (380 aa)
CLCR_08436Uncharacterized protein. (520 aa)
CLCR_07960Putative WD repeat-containing protein. (1018 aa)
CLCR_07973Putative WD repeat-containing protein. (969 aa)
NOG1Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (661 aa)
sda1Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (758 aa)
CLCR_08071RRM domain-containing protein. (763 aa)
puf6Pumilio like proteiny domain family member 6. (706 aa)
RPC10DNA-directed RNA polymerases I, II, and III subunit RPABC4. (66 aa)
kri1Protein kri1. (567 aa)
CLCR_08095Putative AAA domain-containing protein. (751 aa)
CLCR_08910Putative formin binding protein. (290 aa)
CLCR_08963Uncharacterized protein. (280 aa)
MPP10U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (713 aa)
CLCR_07970Uncharacterized protein. (931 aa)
CLCR_08717Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (320 aa)
CLCR_08319Ribonuclease P. (434 aa)
CLCR_08501Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (488 aa)
RRP40Exosome complex component RRP40. (266 aa)
rlp24Ribosome biogenesis protein rlp24. (196 aa)
CLCR_10172Putative hyoscyamine 6-dioxygenase; Belongs to the iron/ascorbate-dependent oxidoreductase family. (426 aa)
CUTCCopper homeostasis protein cutC like protein. (223 aa)
CLCR_09511Protein kinase domain-containing protein. (975 aa)
nob120S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (436 aa)
CLCR_09573Periodic tryptophan protein 2 like protein. (888 aa)
CLCR_09706Putative ribosomal rRNA methyltransferase nop2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (724 aa)
utp15U3 small nucleolar RNA-associated protein 15. (533 aa)
rrp4Exosome complex component rrp4. (349 aa)
NOP9Nucleolar protein 9. (710 aa)
CLCR_10550RNA binding protein. (321 aa)
CLCR_09758CLP1_P domain-containing protein. (647 aa)
CLCR_10034Smr domain protein. (524 aa)
CLCR_10699Ribonucleases P/MRP protein subunit. (214 aa)
CLCR_09955Uncharacterized protein. (580 aa)
CLCR_09470DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1220 aa)
NOP16Nucleolar protein 16. (230 aa)
prh1Putative ATP-dependent RNA helicase prh1. (833 aa)
MAK5ATP-dependent RNA helicase MAK5; Belongs to the DEAD box helicase family. (735 aa)
CLCR_09509Putative DNA polymerase V. (1061 aa)
CLCR_09451Uncharacterized protein. (1299 aa)
erb1Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (778 aa)
CLCR_10799Methyltransferase domain-containing protein. (224 aa)
bms1Ribosome biogenesis protein bms1. (1177 aa)
CLCR_10478rRNA-processing protein EFG1. (346 aa)
DBP3ATP-dependent RNA helicase DBP3; Belongs to the DEAD box helicase family. (532 aa)
CLCR_10137Putative RNA polymerase-associated protein LEO1. (468 aa)
DRS1ATP-dependent RNA helicase DRS1; Belongs to the DEAD box helicase family. (798 aa)
NOP14Putative nucleolar complex protein 14. (929 aa)
bimGSerine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (345 aa)
CLCR_00299Stc1 domain-containing protein. (263 aa)
CLCR_00231Uncharacterized protein. (770 aa)
CLCR_002933' exoribonuclease family protein. (386 aa)
utp7Putative U3 small nucleolar RNA-associated protein 7. (557 aa)
CLCR_00878Uncharacterized protein. (381 aa)
utp13Putative U3 small nucleolar RNA-associated protein 13. (992 aa)
CLCR_00963Sm domain-containing protein. (135 aa)
CLCR_00862Pin2-interacting protein X1. (365 aa)
CLCR_00818Putative WD repeat-containing protein C2E1P5.05. (593 aa)
BUD23Putative methyltransferase BUD23. (275 aa)
jip5WD repeat-containing protein jip5. (443 aa)
rpc19DNA-directed RNA polymerases I and III subunit RPAC2. (140 aa)
hus1Checkpoint protein; Belongs to the HUS1 family. (380 aa)
LOC160S ribosomal subunit assembly/export protein LOC1. (196 aa)
CLCR_02961RNA processing factor 1. (442 aa)
CLCR_02812Uncharacterized protein. (658 aa)
CLCR_03046Uncharacterized protein. (289 aa)
CLCR_02786FCP1 homology domain-containing protein. (756 aa)
fcf2rRNA-processing protein fcf2. (225 aa)
dbp8ATP-dependent RNA helicase dbp8; Belongs to the DEAD box helicase family. (532 aa)
mak16Protein MAK16; Belongs to the MAK16 family. (328 aa)
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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