STRINGSTRING
CLCR_04012 CLCR_04012 CLCR_06592 CLCR_06592 ECM16 ECM16 UTP25 UTP25 KRR1 KRR1 utp7 utp7 CLCR_00818 CLCR_00818 SAS10 SAS10 DBP4 DBP4 CLCR_06193 CLCR_06193 CLCR_06110 CLCR_06110 rrp5 rrp5 CLCR_01067 CLCR_01067 CLCR_01026 CLCR_01026 RPS2 RPS2 CLCR_05717 CLCR_05717 FCF1 FCF1 sof1 sof1 CLCR_03501 CLCR_03501
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CLCR_04012Putative vesicle-mediated transport protein Bfr2/Che-1. (554 aa)
CLCR_06592WD_REPEATS_REGION domain-containing protein. (1109 aa)
ECM16Putative ATP-dependent RNA helicase DHR1. (1248 aa)
UTP25U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (738 aa)
KRR1KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (339 aa)
utp7Putative U3 small nucleolar RNA-associated protein 7. (557 aa)
CLCR_00818Putative WD repeat-containing protein C2E1P5.05. (593 aa)
SAS10Something about silencing protein 10. (581 aa)
DBP4RNA helicase. (907 aa)
CLCR_06193U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (277 aa)
CLCR_06110Uncharacterized protein. (326 aa)
rrp5rRNA biogenesis protein rrp5. (1814 aa)
CLCR_01067Utp14 protein. (947 aa)
CLCR_01026Putative HEAT repeat protein (DRIM). (2589 aa)
RPS240S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (261 aa)
CLCR_05717Uncharacterized protein. (568 aa)
FCF1rRNA-processing protein FCF1. (194 aa)
sof1Protein sof1. (398 aa)
CLCR_03501Uncharacterized protein. (439 aa)
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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