10 items (Cladophialophora carrionii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	accC-2	Biotin carboxylase. (626 aa)
	CLCR_01051	Carbamoyl-phosphate synthase L chain ATP-binding protein. (1135 aa)
	accC	Biotin carboxylase. (667 aa)
	cut6	Acetyl-CoA carboxylase. (2285 aa)
	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial. (715 aa)
	ADE2	Phosphoribosylaminoimidazole carboxylase; In the C-terminal section; belongs to the AIR carboxylase family. Class I subfamily. (610 aa)
	MCCA	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial. (822 aa)
	pyc	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. (1186 aa)
	ade1	Bifunctional purine biosynthetic protein ADE1. (796 aa)
	lamA	Putative urea carboxylase. (1260 aa)

Your Current Organism:

Cladophialophora carrionii

NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADE2	ade1	A0A1C1CCT4	A0A1C1D209	Phosphoribosylaminoimidazole carboxylase; In the C-terminal section; belongs to the AIR carboxylase family. Class I subfamily.	Bifunctional purine biosynthetic protein ADE1.	0.999
ADE2	cut6	A0A1C1CCT4	A0A1C1CXP3	Phosphoribosylaminoimidazole carboxylase; In the C-terminal section; belongs to the AIR carboxylase family. Class I subfamily.	Acetyl-CoA carboxylase.	0.624
CLCR_01051	MCCA	A0A1C1CCY3	A0A1C1CBU6	Carbamoyl-phosphate synthase L chain ATP-binding protein.	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial.	0.633
CLCR_01051	MCCC1	A0A1C1CCY3	A0A1C1CPN3	Carbamoyl-phosphate synthase L chain ATP-binding protein.	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial.	0.628
CLCR_01051	accC-2	A0A1C1CCY3	A0A1C1D0I5	Carbamoyl-phosphate synthase L chain ATP-binding protein.	Biotin carboxylase.	0.866
CLCR_01051	cut6	A0A1C1CCY3	A0A1C1CXP3	Carbamoyl-phosphate synthase L chain ATP-binding protein.	Acetyl-CoA carboxylase.	0.738
CLCR_01051	lamA	A0A1C1CCY3	A0A1C1CEZ5	Carbamoyl-phosphate synthase L chain ATP-binding protein.	Putative urea carboxylase.	0.865
CLCR_01051	pyc	A0A1C1CCY3	A0A1C1CBP9	Carbamoyl-phosphate synthase L chain ATP-binding protein.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.631
MCCA	CLCR_01051	A0A1C1CBU6	A0A1C1CCY3	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial.	Carbamoyl-phosphate synthase L chain ATP-binding protein.	0.633
MCCA	accC	A0A1C1CBU6	A0A1C1CXY8	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial.	Biotin carboxylase.	0.622
MCCA	accC-2	A0A1C1CBU6	A0A1C1D0I5	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial.	Biotin carboxylase.	0.428
MCCA	cut6	A0A1C1CBU6	A0A1C1CXP3	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial.	Acetyl-CoA carboxylase.	0.711
MCCA	lamA	A0A1C1CBU6	A0A1C1CEZ5	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial.	Putative urea carboxylase.	0.435
MCCA	pyc	A0A1C1CBU6	A0A1C1CBP9	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.723
MCCC1	CLCR_01051	A0A1C1CPN3	A0A1C1CCY3	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial.	Carbamoyl-phosphate synthase L chain ATP-binding protein.	0.628
MCCC1	accC	A0A1C1CPN3	A0A1C1CXY8	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial.	Biotin carboxylase.	0.619
MCCC1	accC-2	A0A1C1CPN3	A0A1C1D0I5	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial.	Biotin carboxylase.	0.427
MCCC1	cut6	A0A1C1CPN3	A0A1C1CXP3	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial.	Acetyl-CoA carboxylase.	0.711
MCCC1	lamA	A0A1C1CPN3	A0A1C1CEZ5	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial.	Putative urea carboxylase.	0.419
MCCC1	pyc	A0A1C1CPN3	A0A1C1CBP9	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.719