STRINGSTRING
rps6b rps6b RPS12 RPS12 CLCR_09758 CLCR_09758 CLCR_09960 CLCR_09960 rrp4 rrp4 utp15 utp15 CLCR_09573 CLCR_09573 nob1 nob1 CLCR_09454 CLCR_09454 hhp1 hhp1 CLCR_08412 CLCR_08412 NOP4 NOP4 RRP40 RRP40 CLCR_11382 CLCR_11382 CLCR_08319 CLCR_08319 CLCR_09140 CLCR_09140 MPP10 MPP10 STS1 STS1 mtr4 mtr4 CLCR_11368 CLCR_11368 CLCR_08979 CLCR_08979 CLCR_09114 CLCR_09114 CLCR_07973 CLCR_07973 CLCR_09000 CLCR_09000 CLCR_07960 CLCR_07960 RPS16B RPS16B CLCR_08436 CLCR_08436 nop56 nop56 KRR1 KRR1 CLCR_08664 CLCR_08664 rpl28e rpl28e CLCR_07778 CLCR_07778 CLCR_01067 CLCR_01067 CLCR_01026 CLCR_01026 rrp45 rrp45 UTP18 UTP18 CLCR_02093 CLCR_02093 CLCR_02019 CLCR_02019 RPS2 RPS2 CLCR_01808 CLCR_01808 CLCR_02139 CLCR_02139 FCF1 FCF1 CLCR_02042 CLCR_02042 RPS0 RPS0 NEP1 NEP1 nop58 nop58 rat1 rat1 sof1 sof1 CLCR_02494 CLCR_02494 RRP3 RRP3 rrp6 rrp6 RPS18 RPS18 CLCR_03501 CLCR_03501 CLCR_03270 CLCR_03270 rps19 rps19 rps20 rps20 CLCR_03869 CLCR_03869 CLCR_04241 CLCR_04241 CLCR_03842 CLCR_03842 rio1 rio1 rps8b rps8b rps10a rps10a CLCR_04287 CLCR_04287 CLCR_04290 CLCR_04290 CLCR_05136 CLCR_05136 RPS13 RPS13 CLCR_05024 CLCR_05024 CLCR_04771 CLCR_04771 imp3 imp3 SKI6 SKI6 CLCR_07445 CLCR_07445 rpl37A rpl37A utp10 utp10 rps24a rps24a CLCR_06592 CLCR_06592 CLCR_11355 CLCR_11355 RPL34B RPL34B NUG1 NUG1 CLCR_07113 CLCR_07113 CLCR_07725 CLCR_07725 ROK1 ROK1 CLCR_06708 CLCR_06708 CLCR_07088 CLCR_07088 UTP25 UTP25 rps23 rps23 ECM16 ECM16 CLCR_07363 CLCR_07363 CLCR_07095 CLCR_07095 CLCR_07030 CLCR_07030 CLCR_07597 CLCR_07597 UTP6 UTP6 NIP7 NIP7 CLCR_00708 CLCR_00708 RPS4 RPS4 CLCR_00638 CLCR_00638 CLCR_06193 CLCR_06193 SAS10 SAS10 snu13 snu13 CLCR_06105 CLCR_06105 CLCR_06188 CLCR_06188 rex4 rex4 ebp2 ebp2 rio2 rio2 rrp5 rrp5 CLCR_11219 CLCR_11219 CLCR_06027 CLCR_06027 CLCR_06212 CLCR_06212 Exosc1 Exosc1 spb1 spb1 IMP4 IMP4 rps3 rps3 CLCR_00062 CLCR_00062 ytm1 ytm1 NOP7 NOP7 CLCR_00525 CLCR_00525 PNO1 PNO1 dbp8 dbp8 CLCR_02763 CLCR_02763 ipi1 ipi1 rps1 rps1 CLCR_02812 CLCR_02812 RPL2 RPL2 BUD23 BUD23 CLCR_00818 CLCR_00818 utp13 utp13 MRPS8 MRPS8 utp7 utp7 rps11a rps11a CLCR_00293 CLCR_00293 RPS15 RPS15 NOP14 NOP14 bms1 bms1 CLCR_09943 CLCR_09943 CLCR_10799 CLCR_10799 erb1 erb1 RPS9 RPS9
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rps6b40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (239 aa)
RPS1240S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (153 aa)
CLCR_09758CLP1_P domain-containing protein. (647 aa)
CLCR_09960Uncharacterized protein. (558 aa)
rrp4Exosome complex component rrp4. (349 aa)
utp15U3 small nucleolar RNA-associated protein 15. (533 aa)
CLCR_09573Periodic tryptophan protein 2 like protein. (888 aa)
nob120S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (436 aa)
CLCR_09454Sentrin-specific protease 7. (1262 aa)
hhp1Casein kinase I hhp1; Belongs to the protein kinase superfamily. (373 aa)
CLCR_08412WD domain, G-beta repeat containing protein. (535 aa)
NOP4Nucleolar protein 4. (734 aa)
RRP40Exosome complex component RRP40. (266 aa)
CLCR_1138240S ribosomal protein S27. (111 aa)
CLCR_08319Ribonuclease P. (434 aa)
CLCR_09140Nucleolar Nop52. (201 aa)
MPP10U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (713 aa)
STS1Tethering factor for nuclear proteasome STS1; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins. (320 aa)
mtr4ATP-dependent RNA helicase mtr4. (1010 aa)
CLCR_11368Uncharacterized protein. (569 aa)
CLCR_0897940S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (234 aa)
CLCR_0911440S ribosomal protein S17. (150 aa)
CLCR_07973Putative WD repeat-containing protein. (969 aa)
CLCR_0900040S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (194 aa)
CLCR_07960Putative WD repeat-containing protein. (1018 aa)
RPS16B40S ribosomal protein S16-B; Belongs to the universal ribosomal protein uS9 family. (143 aa)
CLCR_08436Uncharacterized protein. (520 aa)
nop56Nucleolar protein 56. (517 aa)
KRR1KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (339 aa)
CLCR_08664Putative RNA 3'-terminal phosphate cyclase-like protein. (407 aa)
rpl28ePutative 60S ribosomal protein L28e. (152 aa)
CLCR_07778Uncharacterized protein. (112 aa)
CLCR_01067Utp14 protein. (947 aa)
CLCR_01026Putative HEAT repeat protein (DRIM). (2589 aa)
rrp45Exosome complex component rrp45. (291 aa)
UTP18U3 small nucleolar RNA-associated protein 18. (590 aa)
CLCR_02093Protein required for cell viability Rrp17. (225 aa)
CLCR_02019Uncharacterized protein. (358 aa)
RPS240S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (261 aa)
CLCR_01808U3 small nucleolar RNA-associated protein. (1058 aa)
CLCR_02139Uncharacterized protein. (100 aa)
FCF1rRNA-processing protein FCF1. (194 aa)
CLCR_02042Uncharacterized protein. (324 aa)
RPS040S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (286 aa)
NEP1Ribosomal RNA small subunit methyltransferase NEP1. (260 aa)
nop58Nucleolar protein 58. (667 aa)
rat15'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (1054 aa)
sof1Protein sof1. (398 aa)
CLCR_02494Uncharacterized protein. (385 aa)
RRP3ATP-dependent rRNA helicase RRP3; Belongs to the DEAD box helicase family. (472 aa)
rrp6Exosome complex exonuclease rrp6. (829 aa)
RPS1840S ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family. (155 aa)
CLCR_03501Uncharacterized protein. (439 aa)
CLCR_03270U3 small nucleolar RNA-associated protein 22. (1150 aa)
rps1940S ribosomal protein S19. (155 aa)
rps2040S ribosomal protein S20. (116 aa)
CLCR_03869Ribosome biogenesis protein tsr1 like protein. (825 aa)
CLCR_04241Uncharacterized protein. (335 aa)
CLCR_03842Putative small nucleolar ribonucleoprotein complex component (Utp5). (959 aa)
rio1Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (620 aa)
rps8b40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (204 aa)
rps10a40S ribosomal protein S10-A. (169 aa)
CLCR_04287CBF domain-containing protein. (293 aa)
CLCR_04290RNase_PH domain-containing protein. (290 aa)
CLCR_05136Methyltransf_25 domain-containing protein. (242 aa)
RPS1340S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (174 aa)
CLCR_05024Putative ribonuclease P protein subunit 3. (324 aa)
CLCR_04771Dynactin subunit. (528 aa)
imp3U3 small nucleolar ribonucleoprotein imp3. (188 aa)
SKI6Exosome complex component SKI6. (258 aa)
CLCR_07445Ribosomal small subunit assembly protein. (302 aa)
rpl37A60S ribosomal protein L37a. (92 aa)
utp10U3 small nucleolar RNA-associated protein 10. (1896 aa)
rps24a40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (135 aa)
CLCR_06592WD_REPEATS_REGION domain-containing protein. (1109 aa)
CLCR_11355Uncharacterized protein. (147 aa)
RPL34B60S ribosomal protein L34-B. (128 aa)
NUG1Nuclear GTP-binding protein NUG1. (545 aa)
CLCR_07113rRNA 2'-O-methyltransferase fibrillarin. (324 aa)
CLCR_0772540S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (98 aa)
ROK1ATP-dependent RNA helicase ROK1. (683 aa)
CLCR_06708RIX1 domain-containing protein. (772 aa)
CLCR_07088Low temperature viability protein. (478 aa)
UTP25U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (738 aa)
rps2340S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (146 aa)
ECM16Putative ATP-dependent RNA helicase DHR1. (1248 aa)
CLCR_07363RNase_PH domain-containing protein. (353 aa)
CLCR_07095Uncharacterized protein. (472 aa)
CLCR_07030Uncharacterized protein. (536 aa)
CLCR_0759740S ribosomal protein S22; Belongs to the universal ribosomal protein uS8 family. (130 aa)
UTP6U3 small nucleolar RNA-associated protein 6. (392 aa)
NIP760S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (186 aa)
CLCR_0070840S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (203 aa)
RPS440S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (264 aa)
CLCR_00638Mitochondrial 37S ribosomal protein NAM9. (431 aa)
CLCR_06193U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (277 aa)
SAS10Something about silencing protein 10. (581 aa)
snu13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (126 aa)
CLCR_061053' exoribonuclease family protein. (312 aa)
CLCR_06188NAD dependent epimerase/dehydratase. (281 aa)
rex4RNA exonuclease 4. (310 aa)
ebp2Putative rRNA-processing protein ebp2. (391 aa)
rio2Serine/threonine-protein kinase rio2. (381 aa)
rrp5rRNA biogenesis protein rrp5. (1814 aa)
CLCR_1121940S ribosomal protein S29. (74 aa)
CLCR_06027Uncharacterized protein. (367 aa)
CLCR_06212Uncharacterized protein. (270 aa)
Exosc1Exosome complex component CSL4. (209 aa)
spb1AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (833 aa)
IMP4U3 small nucleolar ribonucleoprotein IMP4. (296 aa)
rps340S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (267 aa)
CLCR_00062Putative exosome-associated protein. (275 aa)
ytm1Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (463 aa)
NOP7Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (674 aa)
CLCR_0052540S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (121 aa)
PNO1Pre-rRNA-processing protein PNO1. (264 aa)
dbp8ATP-dependent RNA helicase dbp8; Belongs to the DEAD box helicase family. (532 aa)
CLCR_02763ULP_PROTEASE domain-containing protein. (876 aa)
ipi1Pre-rRNA-processing protein ipi1. (324 aa)
rps140S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family. (257 aa)
CLCR_02812Uncharacterized protein. (658 aa)
RPL260S ribosomal protein L2. (254 aa)
BUD23Putative methyltransferase BUD23. (275 aa)
CLCR_00818Putative WD repeat-containing protein C2E1P5.05. (593 aa)
utp13Putative U3 small nucleolar RNA-associated protein 13. (992 aa)
MRPS837S ribosomal protein S8, mitochondrial. (170 aa)
utp7Putative U3 small nucleolar RNA-associated protein 7. (557 aa)
rps11a40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (162 aa)
CLCR_002933' exoribonuclease family protein. (386 aa)
RPS1540S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (153 aa)
NOP14Putative nucleolar complex protein 14. (929 aa)
bms1Ribosome biogenesis protein bms1. (1177 aa)
CLCR_09943Uncharacterized protein. (586 aa)
CLCR_10799Methyltransferase domain-containing protein. (224 aa)
erb1Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (778 aa)
RPS940S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (193 aa)
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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