STRINGSTRING
CLCR_02139 CLCR_02139 RPS2 RPS2 CLCR_02019 CLCR_02019 CLCR_02093 CLCR_02093 UTP18 UTP18 rrp45 rrp45 CLCR_01026 CLCR_01026 CLCR_01067 CLCR_01067 PNO1 PNO1 CLCR_00525 CLCR_00525 NOP7 NOP7 ytm1 ytm1 CLCR_00062 CLCR_00062 rps3 rps3 IMP4 IMP4 spb1 spb1 Exosc1 Exosc1 CLCR_06212 CLCR_06212 CLCR_06027 CLCR_06027 CLCR_11219 CLCR_11219 rrp5 rrp5 rio2 rio2 ebp2 ebp2 rex4 rex4 CLCR_06188 CLCR_06188 CLCR_06105 CLCR_06105 snu13 snu13 SAS10 SAS10 CLCR_06193 CLCR_06193 CLCR_00638 CLCR_00638 RPS4 RPS4 CLCR_00708 CLCR_00708 NIP7 NIP7 UTP6 UTP6 dbp8 dbp8 CLCR_02763 CLCR_02763 ipi1 ipi1 rps1 rps1 CLCR_02812 CLCR_02812 RPL2 RPL2 BUD23 BUD23 CLCR_00818 CLCR_00818 utp13 utp13 MRPS8 MRPS8 utp7 utp7 rps11a rps11a CLCR_00293 CLCR_00293 RPS15 RPS15 NOP14 NOP14 bms1 bms1 CLCR_09943 CLCR_09943 CLCR_10799 CLCR_10799 erb1 erb1 RPS9 RPS9 rps6b rps6b RPS12 RPS12 CLCR_09758 CLCR_09758 CLCR_09960 CLCR_09960 CLCR_10068 CLCR_10068 rrp4 rrp4 TSR3 TSR3 utp15 utp15 CLCR_09573 CLCR_09573 nob1 nob1 CLCR_09454 CLCR_09454 hhp1 hhp1 CLCR_08412 CLCR_08412 NOP4 NOP4 RRP40 RRP40 CLCR_11382 CLCR_11382 CLCR_08319 CLCR_08319 CLCR_09140 CLCR_09140 MPP10 MPP10 STS1 STS1 mtr4 mtr4 CLCR_11368 CLCR_11368 CLCR_08979 CLCR_08979 CLCR_09114 CLCR_09114 CLCR_07973 CLCR_07973 CLCR_09000 CLCR_09000 CLCR_07960 CLCR_07960 RPS16B RPS16B CLCR_08436 CLCR_08436 nop56 nop56 KRR1 KRR1 CLCR_08664 CLCR_08664 rpl28e rpl28e CLCR_07778 CLCR_07778 CLCR_06708 CLCR_06708 CLCR_07088 CLCR_07088 UTP25 UTP25 rps23 rps23 ECM16 ECM16 CLCR_07363 CLCR_07363 CLCR_07095 CLCR_07095 CLCR_07030 CLCR_07030 CLCR_07597 CLCR_07597 ROK1 ROK1 CLCR_07725 CLCR_07725 CLCR_07113 CLCR_07113 NUG1 NUG1 RPL34B RPL34B CLCR_11355 CLCR_11355 CLCR_06592 CLCR_06592 rps24a rps24a utp10 utp10 rpl37A rpl37A CLCR_07445 CLCR_07445 SKI6 SKI6 imp3 imp3 CLCR_04771 CLCR_04771 CLCR_05024 CLCR_05024 RPS13 RPS13 CLCR_05136 CLCR_05136 CLCR_04290 CLCR_04290 CLCR_04287 CLCR_04287 rps10a rps10a DIM1 DIM1 rps8b rps8b rio1 rio1 CLCR_03842 CLCR_03842 CLCR_04241 CLCR_04241 CLCR_03869 CLCR_03869 rps20 rps20 rps19 rps19 CLCR_03270 CLCR_03270 CLCR_03501 CLCR_03501 RPS18 RPS18 rrp6 rrp6 RRP3 RRP3 CLCR_02494 CLCR_02494 sof1 sof1 rat1 rat1 nop58 nop58 NEP1 NEP1 RPS0 RPS0 NAT10 NAT10 CLCR_02042 CLCR_02042 FCF1 FCF1 CLCR_01808 CLCR_01808
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CLCR_02139Uncharacterized protein. (100 aa)
RPS240S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (261 aa)
CLCR_02019Uncharacterized protein. (358 aa)
CLCR_02093Protein required for cell viability Rrp17. (225 aa)
UTP18U3 small nucleolar RNA-associated protein 18. (590 aa)
rrp45Exosome complex component rrp45. (291 aa)
CLCR_01026Putative HEAT repeat protein (DRIM). (2589 aa)
CLCR_01067Utp14 protein. (947 aa)
PNO1Pre-rRNA-processing protein PNO1. (264 aa)
CLCR_0052540S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (121 aa)
NOP7Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (674 aa)
ytm1Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (463 aa)
CLCR_00062Putative exosome-associated protein. (275 aa)
rps340S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (267 aa)
IMP4U3 small nucleolar ribonucleoprotein IMP4. (296 aa)
spb1AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (833 aa)
Exosc1Exosome complex component CSL4. (209 aa)
CLCR_06212Uncharacterized protein. (270 aa)
CLCR_06027Uncharacterized protein. (367 aa)
CLCR_1121940S ribosomal protein S29. (74 aa)
rrp5rRNA biogenesis protein rrp5. (1814 aa)
rio2Serine/threonine-protein kinase rio2. (381 aa)
ebp2Putative rRNA-processing protein ebp2. (391 aa)
rex4RNA exonuclease 4. (310 aa)
CLCR_06188NAD dependent epimerase/dehydratase. (281 aa)
CLCR_061053' exoribonuclease family protein. (312 aa)
snu13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (126 aa)
SAS10Something about silencing protein 10. (581 aa)
CLCR_06193U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (277 aa)
CLCR_00638Mitochondrial 37S ribosomal protein NAM9. (431 aa)
RPS440S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (264 aa)
CLCR_0070840S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (203 aa)
NIP760S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (186 aa)
UTP6U3 small nucleolar RNA-associated protein 6. (392 aa)
dbp8ATP-dependent RNA helicase dbp8; Belongs to the DEAD box helicase family. (532 aa)
CLCR_02763ULP_PROTEASE domain-containing protein. (876 aa)
ipi1Pre-rRNA-processing protein ipi1. (324 aa)
rps140S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family. (257 aa)
CLCR_02812Uncharacterized protein. (658 aa)
RPL260S ribosomal protein L2. (254 aa)
BUD23Putative methyltransferase BUD23. (275 aa)
CLCR_00818Putative WD repeat-containing protein C2E1P5.05. (593 aa)
utp13Putative U3 small nucleolar RNA-associated protein 13. (992 aa)
MRPS837S ribosomal protein S8, mitochondrial. (170 aa)
utp7Putative U3 small nucleolar RNA-associated protein 7. (557 aa)
rps11a40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (162 aa)
CLCR_002933' exoribonuclease family protein. (386 aa)
RPS1540S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (153 aa)
NOP14Putative nucleolar complex protein 14. (929 aa)
bms1Ribosome biogenesis protein bms1. (1177 aa)
CLCR_09943Uncharacterized protein. (586 aa)
CLCR_10799Methyltransferase domain-containing protein. (224 aa)
erb1Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (778 aa)
RPS940S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (193 aa)
rps6b40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (239 aa)
RPS1240S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (153 aa)
CLCR_09758CLP1_P domain-containing protein. (647 aa)
CLCR_09960Uncharacterized protein. (558 aa)
CLCR_10068THUMP domain protein. (421 aa)
rrp4Exosome complex component rrp4. (349 aa)
TSR3Ribosome biogenesis protein TSR3; Ribosome biogenesis protein required for processing 35S pre- rRNA at site D; Belongs to the TSR3 family. (406 aa)
utp15U3 small nucleolar RNA-associated protein 15. (533 aa)
CLCR_09573Periodic tryptophan protein 2 like protein. (888 aa)
nob120S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (436 aa)
CLCR_09454Sentrin-specific protease 7. (1262 aa)
hhp1Casein kinase I hhp1; Belongs to the protein kinase superfamily. (373 aa)
CLCR_08412WD domain, G-beta repeat containing protein. (535 aa)
NOP4Nucleolar protein 4. (734 aa)
RRP40Exosome complex component RRP40. (266 aa)
CLCR_1138240S ribosomal protein S27. (111 aa)
CLCR_08319Ribonuclease P. (434 aa)
CLCR_09140Nucleolar Nop52. (201 aa)
MPP10U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (713 aa)
STS1Tethering factor for nuclear proteasome STS1; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins. (320 aa)
mtr4ATP-dependent RNA helicase mtr4. (1010 aa)
CLCR_11368Uncharacterized protein. (569 aa)
CLCR_0897940S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (234 aa)
CLCR_0911440S ribosomal protein S17. (150 aa)
CLCR_07973Putative WD repeat-containing protein. (969 aa)
CLCR_0900040S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (194 aa)
CLCR_07960Putative WD repeat-containing protein. (1018 aa)
RPS16B40S ribosomal protein S16-B; Belongs to the universal ribosomal protein uS9 family. (143 aa)
CLCR_08436Uncharacterized protein. (520 aa)
nop56Nucleolar protein 56. (517 aa)
KRR1KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (339 aa)
CLCR_08664Putative RNA 3'-terminal phosphate cyclase-like protein. (407 aa)
rpl28ePutative 60S ribosomal protein L28e. (152 aa)
CLCR_07778Uncharacterized protein. (112 aa)
CLCR_06708RIX1 domain-containing protein. (772 aa)
CLCR_07088Low temperature viability protein. (478 aa)
UTP25U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (738 aa)
rps2340S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (146 aa)
ECM16Putative ATP-dependent RNA helicase DHR1. (1248 aa)
CLCR_07363RNase_PH domain-containing protein. (353 aa)
CLCR_07095Uncharacterized protein. (472 aa)
CLCR_07030Uncharacterized protein. (536 aa)
CLCR_0759740S ribosomal protein S22; Belongs to the universal ribosomal protein uS8 family. (130 aa)
ROK1ATP-dependent RNA helicase ROK1. (683 aa)
CLCR_0772540S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (98 aa)
CLCR_07113rRNA 2'-O-methyltransferase fibrillarin. (324 aa)
NUG1Nuclear GTP-binding protein NUG1. (545 aa)
RPL34B60S ribosomal protein L34-B. (128 aa)
CLCR_11355Uncharacterized protein. (147 aa)
CLCR_06592WD_REPEATS_REGION domain-containing protein. (1109 aa)
rps24a40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (135 aa)
utp10U3 small nucleolar RNA-associated protein 10. (1896 aa)
rpl37A60S ribosomal protein L37a. (92 aa)
CLCR_07445Ribosomal small subunit assembly protein. (302 aa)
SKI6Exosome complex component SKI6. (258 aa)
imp3U3 small nucleolar ribonucleoprotein imp3. (188 aa)
CLCR_04771Dynactin subunit. (528 aa)
CLCR_05024Putative ribonuclease P protein subunit 3. (324 aa)
RPS1340S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (174 aa)
CLCR_05136Methyltransf_25 domain-containing protein. (242 aa)
CLCR_04290RNase_PH domain-containing protein. (290 aa)
CLCR_04287CBF domain-containing protein. (293 aa)
rps10a40S ribosomal protein S10-A. (169 aa)
DIM1rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (403 aa)
rps8b40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (204 aa)
rio1Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (620 aa)
CLCR_03842Putative small nucleolar ribonucleoprotein complex component (Utp5). (959 aa)
CLCR_04241Uncharacterized protein. (335 aa)
CLCR_03869Ribosome biogenesis protein tsr1 like protein. (825 aa)
rps2040S ribosomal protein S20. (116 aa)
rps1940S ribosomal protein S19. (155 aa)
CLCR_03270U3 small nucleolar RNA-associated protein 22. (1150 aa)
CLCR_03501Uncharacterized protein. (439 aa)
RPS1840S ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family. (155 aa)
rrp6Exosome complex exonuclease rrp6. (829 aa)
RRP3ATP-dependent rRNA helicase RRP3; Belongs to the DEAD box helicase family. (472 aa)
CLCR_02494Uncharacterized protein. (385 aa)
sof1Protein sof1. (398 aa)
rat15'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (1054 aa)
nop58Nucleolar protein 58. (667 aa)
NEP1Ribosomal RNA small subunit methyltransferase NEP1. (260 aa)
RPS040S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (286 aa)
NAT10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1115 aa)
CLCR_02042Uncharacterized protein. (324 aa)
FCF1rRNA-processing protein FCF1. (194 aa)
CLCR_01808U3 small nucleolar RNA-associated protein. (1058 aa)
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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