9 items (Cladophialophora carrionii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CLCR_03802	Signaling protein; Belongs to the DOCK family. (1452 aa)
	CLCR_04028	TPR Domain containing protein. (527 aa)
	CLCR_06912	Uncharacterized protein. (606 aa)
	CLCR_07882	Uncharacterized protein. (2223 aa)
	CLCR_08449	Uncharacterized protein. (486 aa)
	gap1	GTPase-activating protein. (775 aa)
	rac1A	Rho-related protein rac1A. (178 aa)
	CLCR_00396	RhoGAP domain containing protein. (676 aa)
	CLCR_05426	Putative Rho guanyl nucleotide exchange factor. (947 aa)

Your Current Organism:

Cladophialophora carrionii

NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLCR_00396	rac1A	A0A1C1CC28	A0A1C1CXB0	RhoGAP domain containing protein.	Rho-related protein rac1A.	0.672
CLCR_03802	CLCR_05426	A0A1C1CIG7	A0A1C1C715	Signaling protein; Belongs to the DOCK family.	Putative Rho guanyl nucleotide exchange factor.	0.429
CLCR_03802	CLCR_06912	A0A1C1CIG7	A0A1C1CPM5	Signaling protein; Belongs to the DOCK family.	Uncharacterized protein.	0.989
CLCR_03802	gap1	A0A1C1CIG7	A0A1C1CX94	Signaling protein; Belongs to the DOCK family.	GTPase-activating protein.	0.451
CLCR_03802	rac1A	A0A1C1CIG7	A0A1C1CXB0	Signaling protein; Belongs to the DOCK family.	Rho-related protein rac1A.	0.969
CLCR_04028	rac1A	A0A1C1CIV1	A0A1C1CXB0	TPR Domain containing protein.	Rho-related protein rac1A.	0.841
CLCR_05426	CLCR_03802	A0A1C1C715	A0A1C1CIG7	Putative Rho guanyl nucleotide exchange factor.	Signaling protein; Belongs to the DOCK family.	0.429
CLCR_05426	CLCR_06912	A0A1C1C715	A0A1C1CPM5	Putative Rho guanyl nucleotide exchange factor.	Uncharacterized protein.	0.532
CLCR_05426	rac1A	A0A1C1C715	A0A1C1CXB0	Putative Rho guanyl nucleotide exchange factor.	Rho-related protein rac1A.	0.981
CLCR_06912	CLCR_03802	A0A1C1CPM5	A0A1C1CIG7	Uncharacterized protein.	Signaling protein; Belongs to the DOCK family.	0.989
CLCR_06912	CLCR_05426	A0A1C1CPM5	A0A1C1C715	Uncharacterized protein.	Putative Rho guanyl nucleotide exchange factor.	0.532
CLCR_06912	rac1A	A0A1C1CPM5	A0A1C1CXB0	Uncharacterized protein.	Rho-related protein rac1A.	0.940
CLCR_07882	gap1	A0A1C1CSL1	A0A1C1CX94	Uncharacterized protein.	GTPase-activating protein.	0.591
CLCR_07882	rac1A	A0A1C1CSL1	A0A1C1CXB0	Uncharacterized protein.	Rho-related protein rac1A.	0.668
gap1	CLCR_03802	A0A1C1CX94	A0A1C1CIG7	GTPase-activating protein.	Signaling protein; Belongs to the DOCK family.	0.451
gap1	CLCR_07882	A0A1C1CX94	A0A1C1CSL1	GTPase-activating protein.	Uncharacterized protein.	0.591
gap1	rac1A	A0A1C1CX94	A0A1C1CXB0	GTPase-activating protein.	Rho-related protein rac1A.	0.745
rac1A	CLCR_00396	A0A1C1CXB0	A0A1C1CC28	Rho-related protein rac1A.	RhoGAP domain containing protein.	0.672
rac1A	CLCR_03802	A0A1C1CXB0	A0A1C1CIG7	Rho-related protein rac1A.	Signaling protein; Belongs to the DOCK family.	0.969
rac1A	CLCR_04028	A0A1C1CXB0	A0A1C1CIV1	Rho-related protein rac1A.	TPR Domain containing protein.	0.841