15 items (Cladophialophora carrionii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ain1	Alpha-actinin-like protein 1. (665 aa)
	CLCR_06631	Non-specific serine/threonine protein kinase. (882 aa)
	CLCR_06711	Uncharacterized protein. (752 aa)
	ste20	Non-specific serine/threonine protein kinase. (875 aa)
	CLCR_09570	Putative Rho GTPase activator (Rgd1). (892 aa)
	CLCR_00764	WD_REPEATS_REGION domain-containing protein. (1188 aa)
	CLCR_00479	Uncharacterized protein. (325 aa)
	chc1	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1354 aa)
	CLCR_00356	RhoGAP domain protein. (1364 aa)
	cdc42	Cell division control protein 42 like protein. (236 aa)
	CLCR_02820	Actin associated protein Wsp1. (640 aa)
	txl1	Thioredoxin-like protein 1. (318 aa)
	TPM2	Tropomyosin-2. (165 aa)
	CLCR_03807	RhoGAP domain containing protein. (1228 aa)
	CLCR_06540	RasGAP-like protein. (1644 aa)

Your Current Organism:

Cladophialophora carrionii

NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLCR_00356	CLCR_03807	A0A1C1CC50	A0A1C1CI96	RhoGAP domain protein.	RhoGAP domain containing protein.	0.996
CLCR_00356	CLCR_06631	A0A1C1CC50	A0A1C1CQG8	RhoGAP domain protein.	Non-specific serine/threonine protein kinase.	0.565
CLCR_00356	CLCR_09570	A0A1C1CC50	A0A1C1CZ50	RhoGAP domain protein.	Putative Rho GTPase activator (Rgd1).	0.766
CLCR_00356	cdc42	A0A1C1CC50	A0A1C1CCP6	RhoGAP domain protein.	Cell division control protein 42 like protein.	0.962
CLCR_00356	ste20	A0A1C1CC50	A0A1C1CYY9	RhoGAP domain protein.	Non-specific serine/threonine protein kinase.	0.565
CLCR_00479	CLCR_02820	A0A1C1CBS7	A0A1C1D1K2	Uncharacterized protein.	Actin associated protein Wsp1.	0.838
CLCR_00479	CLCR_03807	A0A1C1CBS7	A0A1C1CI96	Uncharacterized protein.	RhoGAP domain containing protein.	0.982
CLCR_00479	CLCR_06540	A0A1C1CBS7	A0A1C1CM41	Uncharacterized protein.	RasGAP-like protein.	0.647
CLCR_00479	CLCR_06631	A0A1C1CBS7	A0A1C1CQG8	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.647
CLCR_00479	CLCR_09570	A0A1C1CBS7	A0A1C1CZ50	Uncharacterized protein.	Putative Rho GTPase activator (Rgd1).	0.641
CLCR_00479	TPM2	A0A1C1CBS7	A0A1C1CDF7	Uncharacterized protein.	Tropomyosin-2.	0.655
CLCR_00479	cdc42	A0A1C1CBS7	A0A1C1CCP6	Uncharacterized protein.	Cell division control protein 42 like protein.	0.726
CLCR_00479	chc1	A0A1C1CBS7	A0A1C1CBU5	Uncharacterized protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.950
CLCR_00479	ste20	A0A1C1CBS7	A0A1C1CYY9	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.647
CLCR_00479	txl1	A0A1C1CBS7	A0A1C1D1E5	Uncharacterized protein.	Thioredoxin-like protein 1.	0.664
CLCR_00764	CLCR_06540	A0A1C1D0X5	A0A1C1CM41	WD_REPEATS_REGION domain-containing protein.	RasGAP-like protein.	0.643
CLCR_00764	CLCR_06631	A0A1C1D0X5	A0A1C1CQG8	WD_REPEATS_REGION domain-containing protein.	Non-specific serine/threonine protein kinase.	0.683
CLCR_00764	cdc42	A0A1C1D0X5	A0A1C1CCP6	WD_REPEATS_REGION domain-containing protein.	Cell division control protein 42 like protein.	0.654
CLCR_00764	ste20	A0A1C1D0X5	A0A1C1CYY9	WD_REPEATS_REGION domain-containing protein.	Non-specific serine/threonine protein kinase.	0.683
CLCR_02820	CLCR_00479	A0A1C1D1K2	A0A1C1CBS7	Actin associated protein Wsp1.	Uncharacterized protein.	0.838