(5 nodes) TrbL/VirB6 plasmid conjugal transfer protein network (endosymbiont of Acanthamoeba)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIF81462.1	COG3704 Type IV secretory pathway, VirB6 components. (798 aa)
	AIF81850.1	Type IV secretion system protein; COG3704 Type IV secretory pathway, VirB6 components. (906 aa)
	AIF81849.1	Putative type IV secretion system protein; COG3704 Type IV secretory pathway, VirB6 components. (677 aa)
	AIF81926.1	Putative type IV secretion system protein; COG3704 Type IV secretory pathway, VirB6 components. (1014 aa)
	AIF81851.1	Type IV secretion system protein VirB6. (867 aa)

Your Current Organism:

endosymbiont of Acanthamoeba

NCBI taxonomy Id: 86106
Other names: e. of Acanthamoeba sp. UWC8, endosymbiont of Acanthamoeba sp. UWC8

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIF81849.1	AIF81850.1	I862_06475	I862_06480	Putative type IV secretion system protein; COG3704 Type IV secretory pathway, VirB6 components.	Type IV secretion system protein; COG3704 Type IV secretory pathway, VirB6 components.	0.446
AIF81849.1	AIF81851.1	I862_06475	I862_06485	Putative type IV secretion system protein; COG3704 Type IV secretory pathway, VirB6 components.	Type IV secretion system protein VirB6.	0.428
AIF81850.1	AIF81849.1	I862_06480	I862_06475	Type IV secretion system protein; COG3704 Type IV secretory pathway, VirB6 components.	Putative type IV secretion system protein; COG3704 Type IV secretory pathway, VirB6 components.	0.446
AIF81850.1	AIF81851.1	I862_06480	I862_06485	Type IV secretion system protein; COG3704 Type IV secretory pathway, VirB6 components.	Type IV secretion system protein VirB6.	0.842
AIF81851.1	AIF81849.1	I862_06485	I862_06475	Type IV secretion system protein VirB6.	Putative type IV secretion system protein; COG3704 Type IV secretory pathway, VirB6 components.	0.428
AIF81851.1	AIF81850.1	I862_06485	I862_06480	Type IV secretion system protein VirB6.	Type IV secretion system protein; COG3704 Type IV secretory pathway, VirB6 components.	0.842