(56 nodes) Mixed, incl. Formation of xylulose-5-phosphate, and The canonical retinoid cycle in rods (twilight vision) network (Pyrenophora teres)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTT_00358	Uncharacterized protein. (234 aa)
	PTT_01417	Uncharacterized protein. (294 aa)
	PTT_01837	ADH_N domain-containing protein. (386 aa)
	PTT_01841	Uncharacterized protein. (243 aa)
	PTT_02319	DUF2183 domain-containing protein. (1677 aa)
	PTT_05145	ADH_N domain-containing protein. (413 aa)
	PTT_06742	Uncharacterized protein. (543 aa)
	PTT_07161	Uncharacterized protein. (207 aa)
	PTT_07348	Uncharacterized protein. (385 aa)
	PTT_07726	Uncharacterized protein. (265 aa)
	PTT_07862	Uncharacterized protein. (275 aa)
	PTT_07902	Uncharacterized protein. (372 aa)
	PTT_07996	Uncharacterized protein. (650 aa)
	PTT_08274	Uncharacterized protein. (441 aa)
	PTT_08420	Uncharacterized protein. (350 aa)
	PTT_08725	Uncharacterized protein. (337 aa)
	PTT_08729	Aldo_ket_red domain-containing protein. (323 aa)
	PTT_08791	PKS_ER domain-containing protein. (1044 aa)
	PTT_09319	Uncharacterized protein. (468 aa)
	PTT_09601	Uncharacterized protein. (627 aa)
	PTT_09682	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (291 aa)
	PTT_09906	Uncharacterized protein. (300 aa)
	PTT_11112	Uncharacterized protein. (331 aa)
	PTT_11178	PKS_ER domain-containing protein. (394 aa)
	PTT_11207	Uncharacterized protein. (411 aa)
	PTT_11690	Uncharacterized protein. (329 aa)
	PTT_11722	Uncharacterized protein. (378 aa)
	PTT_11946	PfkB domain-containing protein. (350 aa)
	PTT_11951	Uncharacterized protein. (604 aa)
	PTT_11973	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (311 aa)
	PTT_12479	Uncharacterized protein. (256 aa)
	PTT_12770	Uncharacterized protein. (566 aa)
	PTT_12990	Uncharacterized protein. (368 aa)
	PTT_13240	GFO_IDH_MocA domain-containing protein. (425 aa)
	PTT_13329	Uncharacterized protein. (298 aa)
	PTT_13515	Uncharacterized protein; Belongs to the glycosyl hydrolase 43 family. (329 aa)
	PTT_13878	Uncharacterized protein. (303 aa)
	PTT_13959	PKS_ER domain-containing protein. (364 aa)
	PTT_14440	GFO_IDH_MocA domain-containing protein. (400 aa)
	PTT_14792	Uncharacterized protein. (344 aa)
	PTT_14994	Uncharacterized protein. (243 aa)
	PTT_15818	Uncharacterized protein. (329 aa)
	PTT_16264	Uncharacterized protein. (305 aa)
	PTT_16810	GFO_IDH_MocA domain-containing protein. (331 aa)
	PTT_17797	Uncharacterized protein. (309 aa)
	PTT_17847	PKS_ER domain-containing protein. (359 aa)
	PTT_17850	PKS_ER domain-containing protein. (369 aa)
	PTT_18018	ADH_N domain-containing protein. (439 aa)
	PTT_18102	PKS_ER domain-containing protein. (349 aa)
	PTT_18312	Uncharacterized protein. (339 aa)
	PTT_18778	Uncharacterized protein. (322 aa)
	PTT_19221	PKS_ER domain-containing protein. (390 aa)
	PTT_19438	Uncharacterized protein. (367 aa)
	PTT_19510	PKS_ER domain-containing protein. (397 aa)
	PTT_19901	Cutinase domain-containing protein. (228 aa)
	PTT_20036	Uncharacterized protein. (346 aa)

Your Current Organism:

Pyrenophora teres

NCBI taxonomy Id: 861557
Other names: P. teres f. teres 0-1, Pyrenophora teres f. teres 0-1

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTT_01837	PTT_11951	E3RD89	E3RSP2	ADH_N domain-containing protein.	Uncharacterized protein.	0.468
PTT_05145	PTT_11951	E3REV7	E3RSP2	ADH_N domain-containing protein.	Uncharacterized protein.	0.468
PTT_06742	PTT_07726	E3RG45	E3RI98	Uncharacterized protein.	Uncharacterized protein.	0.903
PTT_06742	PTT_09906	E3RG45	E3RMZ1	Uncharacterized protein.	Uncharacterized protein.	0.907
PTT_06742	PTT_11178	E3RG45	E3RQY2	Uncharacterized protein.	PKS_ER domain-containing protein.	0.916
PTT_06742	PTT_17850	E3RG45	E3S5E8	Uncharacterized protein.	PKS_ER domain-containing protein.	0.916
PTT_06742	PTT_19221	E3RG45	E3S8F7	Uncharacterized protein.	PKS_ER domain-containing protein.	0.916
PTT_06742	PTT_19510	E3RG45	E3S920	Uncharacterized protein.	PKS_ER domain-containing protein.	0.916
PTT_07726	PTT_06742	E3RI98	E3RG45	Uncharacterized protein.	Uncharacterized protein.	0.903
PTT_07726	PTT_09906	E3RI98	E3RMZ1	Uncharacterized protein.	Uncharacterized protein.	0.906
PTT_07726	PTT_11178	E3RI98	E3RQY2	Uncharacterized protein.	PKS_ER domain-containing protein.	0.916
PTT_07726	PTT_17850	E3RI98	E3S5E8	Uncharacterized protein.	PKS_ER domain-containing protein.	0.916
PTT_07726	PTT_19221	E3RI98	E3S8F7	Uncharacterized protein.	PKS_ER domain-containing protein.	0.916
PTT_07726	PTT_19510	E3RI98	E3S920	Uncharacterized protein.	PKS_ER domain-containing protein.	0.916
PTT_07902	PTT_14994	E3RIM9	E3RZD5	Uncharacterized protein.	Uncharacterized protein.	0.908
PTT_07902	PTT_18102	E3RIM9	E3S5Y9	Uncharacterized protein.	PKS_ER domain-containing protein.	0.917
PTT_07996	PTT_09319	E3RIV1	E3RLQ4	Uncharacterized protein.	Uncharacterized protein.	0.412
PTT_07996	PTT_09601	E3RIV1	E3RMC9	Uncharacterized protein.	Uncharacterized protein.	0.411
PTT_08420	PTT_11951	E3RJQ9	E3RSP2	Uncharacterized protein.	Uncharacterized protein.	0.468
PTT_08729	PTT_11178	E3RKG8	E3RQY2	Aldo_ket_red domain-containing protein.	PKS_ER domain-containing protein.	0.912