(31 nodes) RNA Polymerase II Transcription Elongation network (Pyrenophora teres)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTT_01057	Uncharacterized protein. (483 aa)
	PTT_06521	RTR1-type domain-containing protein. (300 aa)
	PTT_06767	Plus3 domain-containing protein. (501 aa)
	PTT_06928	Uncharacterized protein. (183 aa)
	PTT_08920	RPOL4c domain-containing protein. (184 aa)
	PTT_09558	CDC73_C domain-containing protein. (426 aa)
	PTT_10532	Uncharacterized protein. (306 aa)
	PTT_11005	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1262 aa)
	PTT_11419	Uncharacterized protein. (163 aa)
	PTT_13131	Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family. (1447 aa)
	PTT_13907	Spt4 domain-containing protein. (289 aa)
	PTT_14039	Uncharacterized protein. (583 aa)
	PTT_14569	RNA_pol_L_2 domain-containing protein. (151 aa)
	PTT_14682	Uncharacterized protein. (263 aa)
	PTT_14854	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (803 aa)
	PTT_15327	Uncharacterized protein. (90 aa)
	PTT_15561	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1738 aa)
	PTT_16125	Uncharacterized protein. (450 aa)
	PTT_16311	FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] (577 aa)
	PTT_16414	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (129 aa)
	PTT_16482	Uncharacterized protein. (235 aa)
	PTT_17536	Uncharacterized protein. (818 aa)
	PTT_17667	Myb-like domain-containing protein. (552 aa)
	PTT_18070	Uncharacterized protein. (72 aa)
	PTT_18537	RPOL9 domain-containing protein. (166 aa)
	PTT_18803	Uncharacterized protein. (1181 aa)
	PTT_19139	Uncharacterized protein. (458 aa)
	PTT_19297	Uncharacterized protein. (1021 aa)
	PTT_19527	TFIIS N-terminal domain-containing protein. (452 aa)
	PTT_19733	S1 motif domain-containing protein. (171 aa)
	PTT_20284	RPOLD domain-containing protein. (334 aa)

Your Current Organism:

Pyrenophora teres

NCBI taxonomy Id: 861557
Other names: P. teres f. teres 0-1, Pyrenophora teres f. teres 0-1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTT_01057	PTT_06521	E3RCU7	E3RFL5	Uncharacterized protein.	RTR1-type domain-containing protein.	0.849
PTT_01057	PTT_06767	E3RCU7	E3RG69	Uncharacterized protein.	Plus3 domain-containing protein.	0.737
PTT_01057	PTT_06928	E3RCU7	E3RGJ3	Uncharacterized protein.	Uncharacterized protein.	0.437
PTT_01057	PTT_08920	E3RCU7	E3RKW6	Uncharacterized protein.	RPOL4c domain-containing protein.	0.955
PTT_01057	PTT_09558	E3RCU7	E3RM98	Uncharacterized protein.	CDC73_C domain-containing protein.	0.803
PTT_01057	PTT_10532	E3RCU7	E3RPG9	Uncharacterized protein.	Uncharacterized protein.	0.923
PTT_01057	PTT_11005	E3RCU7	E3RQK0	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.966
PTT_01057	PTT_11419	E3RCU7	E3RRI1	Uncharacterized protein.	Uncharacterized protein.	0.955
PTT_01057	PTT_13131	E3RCU7	E3RVE0	Uncharacterized protein.	Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family.	0.899
PTT_01057	PTT_13907	E3RCU7	E3RX25	Uncharacterized protein.	Spt4 domain-containing protein.	0.948
PTT_01057	PTT_14039	E3RCU7	E3RXD3	Uncharacterized protein.	Uncharacterized protein.	0.463
PTT_01057	PTT_14569	E3RCU7	E3RYF6	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.955
PTT_01057	PTT_14854	E3RCU7	E3RZ15	Uncharacterized protein.	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	0.903
PTT_01057	PTT_15327	E3RCU7	E3RZZ2	Uncharacterized protein.	Uncharacterized protein.	0.833
PTT_01057	PTT_16125	E3RCU7	E3S1M0	Uncharacterized protein.	Uncharacterized protein.	0.726
PTT_01057	PTT_16311	E3RCU7	E3S205	Uncharacterized protein.	FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...]	0.856
PTT_01057	PTT_16414	E3RCU7	E3S297	Uncharacterized protein.	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	0.733
PTT_01057	PTT_16482	E3RCU7	E3S2F5	Uncharacterized protein.	Uncharacterized protein.	0.955
PTT_01057	PTT_17536	E3RCU7	E3S4M3	Uncharacterized protein.	Uncharacterized protein.	0.833
PTT_01057	PTT_18070	E3RCU7	E3S5W2	Uncharacterized protein.	Uncharacterized protein.	0.955