(18 nodes) Basal transcription factors network (Pyrenophora teres)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTT_00382	Protein kinase domain-containing protein. (437 aa)
	PTT_00786	Uncharacterized protein. (644 aa)
	PTT_03617	Uncharacterized protein. (354 aa)
	PTT_07093	BSD domain-containing protein. (658 aa)
	PTT_08246	Uncharacterized protein. (72 aa)
	PTT_08708	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (482 aa)
	PTT_11476	Uncharacterized protein. (383 aa)
	PTT_12160	HTH TFE/IIEalpha-type domain-containing protein. (417 aa)
	PTT_12637	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (462 aa)
	PTT_12915	RING-type domain-containing protein. (289 aa)
	PTT_13105	TFIIB-type domain-containing protein. (357 aa)
	PTT_16218	BTB domain-containing protein. (983 aa)
	PTT_16692	Uncharacterized protein. (376 aa)
	PTT_17391	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (263 aa)
	PTT_17775	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (113 aa)
	PTT_17803	Uncharacterized protein. (425 aa)
	PTT_20325	Helicase ATP-binding domain-containing protein. (796 aa)
	PTT_20359	Uncharacterized protein. (803 aa)

Your Current Organism:

Pyrenophora teres

NCBI taxonomy Id: 861557
Other names: P. teres f. teres 0-1, Pyrenophora teres f. teres 0-1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTT_00382	PTT_00786	E3RCF7	E3RCQ3	Protein kinase domain-containing protein.	Uncharacterized protein.	0.867
PTT_00382	PTT_03617	E3RCF7	E3RE29	Protein kinase domain-containing protein.	Uncharacterized protein.	0.867
PTT_00382	PTT_07093	E3RCF7	E3RGX4	Protein kinase domain-containing protein.	BSD domain-containing protein.	0.983
PTT_00382	PTT_08246	E3RCF7	E3RJC4	Protein kinase domain-containing protein.	Uncharacterized protein.	0.811
PTT_00382	PTT_08708	E3RCF7	E3RKF1	Protein kinase domain-containing protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.985
PTT_00382	PTT_11476	E3RCF7	E3RRM2	Protein kinase domain-containing protein.	Uncharacterized protein.	0.845
PTT_00382	PTT_12160	E3RCF7	E3RT53	Protein kinase domain-containing protein.	HTH TFE/IIEalpha-type domain-containing protein.	0.997
PTT_00382	PTT_12637	E3RCF7	E3RU89	Protein kinase domain-containing protein.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.989
PTT_00382	PTT_12915	E3RCF7	E3RUX2	Protein kinase domain-containing protein.	RING-type domain-containing protein.	0.999
PTT_00382	PTT_13105	E3RCF7	E3RVB4	Protein kinase domain-containing protein.	TFIIB-type domain-containing protein.	0.988
PTT_00382	PTT_16218	E3RCF7	E3S1T6	Protein kinase domain-containing protein.	BTB domain-containing protein.	0.769
PTT_00382	PTT_16692	E3RCF7	E3S2U4	Protein kinase domain-containing protein.	Uncharacterized protein.	0.999
PTT_00382	PTT_17391	E3RCF7	E3S4D7	Protein kinase domain-containing protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.998
PTT_00382	PTT_17775	E3RCF7	E3S4X9	Protein kinase domain-containing protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.736
PTT_00382	PTT_17803	E3RCF7	E3S5A5	Protein kinase domain-containing protein.	Uncharacterized protein.	0.999
PTT_00382	PTT_20325	E3RCF7	E3SAU9	Protein kinase domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.996
PTT_00382	PTT_20359	E3RCF7	E3SAY3	Protein kinase domain-containing protein.	Uncharacterized protein.	0.990
PTT_00786	PTT_00382	E3RCQ3	E3RCF7	Uncharacterized protein.	Protein kinase domain-containing protein.	0.867
PTT_00786	PTT_03617	E3RCQ3	E3RE29	Uncharacterized protein.	Uncharacterized protein.	0.999
PTT_00786	PTT_07093	E3RCQ3	E3RGX4	Uncharacterized protein.	BSD domain-containing protein.	0.977