6 items (Pyrenophora teres) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTT_03593	Uncharacterized protein. (356 aa)
	PTT_04960	Uncharacterized protein. (351 aa)
	PTT_09832	Uncharacterized protein. (658 aa)
	PTT_09905	Uncharacterized protein. (633 aa)
	PTT_14626	Uncharacterized protein. (353 aa)
	PTT_15332	Uncharacterized protein. (2114 aa)

Your Current Organism:

Pyrenophora teres

NCBI taxonomy Id: 861557
Other names: P. teres f. teres 0-1, Pyrenophora teres f. teres 0-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTT_03593	PTT_09832	E3RE25	E3RMV4	Uncharacterized protein.	Uncharacterized protein.	0.908
PTT_03593	PTT_15332	E3RE25	E3RZZ7	Uncharacterized protein.	Uncharacterized protein.	0.662
PTT_04960	PTT_09832	E3RET3	E3RMV4	Uncharacterized protein.	Uncharacterized protein.	0.908
PTT_04960	PTT_09905	E3RET3	E3RMZ0	Uncharacterized protein.	Uncharacterized protein.	0.908
PTT_04960	PTT_14626	E3RET3	E3RYK0	Uncharacterized protein.	Uncharacterized protein.	0.902
PTT_04960	PTT_15332	E3RET3	E3RZZ7	Uncharacterized protein.	Uncharacterized protein.	0.964
PTT_09832	PTT_03593	E3RMV4	E3RE25	Uncharacterized protein.	Uncharacterized protein.	0.908
PTT_09832	PTT_04960	E3RMV4	E3RET3	Uncharacterized protein.	Uncharacterized protein.	0.908
PTT_09832	PTT_09905	E3RMV4	E3RMZ0	Uncharacterized protein.	Uncharacterized protein.	0.718
PTT_09832	PTT_14626	E3RMV4	E3RYK0	Uncharacterized protein.	Uncharacterized protein.	0.908
PTT_09832	PTT_15332	E3RMV4	E3RZZ7	Uncharacterized protein.	Uncharacterized protein.	0.600
PTT_09905	PTT_04960	E3RMZ0	E3RET3	Uncharacterized protein.	Uncharacterized protein.	0.908
PTT_09905	PTT_09832	E3RMZ0	E3RMV4	Uncharacterized protein.	Uncharacterized protein.	0.718
PTT_09905	PTT_14626	E3RMZ0	E3RYK0	Uncharacterized protein.	Uncharacterized protein.	0.909
PTT_09905	PTT_15332	E3RMZ0	E3RZZ7	Uncharacterized protein.	Uncharacterized protein.	0.951
PTT_14626	PTT_04960	E3RYK0	E3RET3	Uncharacterized protein.	Uncharacterized protein.	0.902
PTT_14626	PTT_09832	E3RYK0	E3RMV4	Uncharacterized protein.	Uncharacterized protein.	0.908
PTT_14626	PTT_09905	E3RYK0	E3RMZ0	Uncharacterized protein.	Uncharacterized protein.	0.909
PTT_14626	PTT_15332	E3RYK0	E3RZZ7	Uncharacterized protein.	Uncharacterized protein.	0.964
PTT_15332	PTT_03593	E3RZZ7	E3RE25	Uncharacterized protein.	Uncharacterized protein.	0.662