(5 nodes) Dihydroxy-acid dehydratase, C-terminal, and Branched-chain aminotransferase network (Pyrenophora teres)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTT_08055	Pyruvate carboxyltransferase domain-containing protein. (629 aa)
	PTT_09184	Uncharacterized protein. (601 aa)
	PTT_09236	Uncharacterized protein. (331 aa)
	PTT_09354	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (418 aa)
	PTT_10816	Uncharacterized protein. (390 aa)

Your Current Organism:

Pyrenophora teres

NCBI taxonomy Id: 861557
Other names: P. teres f. teres 0-1, Pyrenophora teres f. teres 0-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTT_08055	PTT_09184	E3RIZ0	E3RLE4	Pyruvate carboxyltransferase domain-containing protein.	Uncharacterized protein.	0.964
PTT_08055	PTT_09236	E3RIZ0	E3RLI8	Pyruvate carboxyltransferase domain-containing protein.	Uncharacterized protein.	0.964
PTT_08055	PTT_09354	E3RIZ0	E3RLT7	Pyruvate carboxyltransferase domain-containing protein.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.959
PTT_08055	PTT_10816	E3RIZ0	E3RQ55	Pyruvate carboxyltransferase domain-containing protein.	Uncharacterized protein.	0.945
PTT_09184	PTT_08055	E3RLE4	E3RIZ0	Uncharacterized protein.	Pyruvate carboxyltransferase domain-containing protein.	0.964
PTT_09184	PTT_09236	E3RLE4	E3RLI8	Uncharacterized protein.	Uncharacterized protein.	0.902
PTT_09184	PTT_09354	E3RLE4	E3RLT7	Uncharacterized protein.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.968
PTT_09184	PTT_10816	E3RLE4	E3RQ55	Uncharacterized protein.	Uncharacterized protein.	0.964
PTT_09236	PTT_08055	E3RLI8	E3RIZ0	Uncharacterized protein.	Pyruvate carboxyltransferase domain-containing protein.	0.964
PTT_09236	PTT_09184	E3RLI8	E3RLE4	Uncharacterized protein.	Uncharacterized protein.	0.902
PTT_09236	PTT_09354	E3RLI8	E3RLT7	Uncharacterized protein.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.968
PTT_09236	PTT_10816	E3RLI8	E3RQ55	Uncharacterized protein.	Uncharacterized protein.	0.964
PTT_09354	PTT_08055	E3RLT7	E3RIZ0	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	Pyruvate carboxyltransferase domain-containing protein.	0.959
PTT_09354	PTT_09184	E3RLT7	E3RLE4	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein.	0.968
PTT_09354	PTT_09236	E3RLT7	E3RLI8	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein.	0.968
PTT_09354	PTT_10816	E3RLT7	E3RQ55	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein.	0.682
PTT_10816	PTT_08055	E3RQ55	E3RIZ0	Uncharacterized protein.	Pyruvate carboxyltransferase domain-containing protein.	0.945
PTT_10816	PTT_09184	E3RQ55	E3RLE4	Uncharacterized protein.	Uncharacterized protein.	0.964
PTT_10816	PTT_09236	E3RQ55	E3RLI8	Uncharacterized protein.	Uncharacterized protein.	0.964
PTT_10816	PTT_09354	E3RQ55	E3RLT7	Uncharacterized protein.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.682