(4 nodes) CoA carboxylase activity network (Pyrenophora teres)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTT_07918	Uncharacterized protein. (1028 aa)
	PTT_11603	Uncharacterized protein. (509 aa)
	PTT_13326	Uncharacterized protein. (585 aa)
	PTT_13990	Uncharacterized protein. (2279 aa)

Your Current Organism:

Pyrenophora teres

NCBI taxonomy Id: 861557
Other names: P. teres f. teres 0-1, Pyrenophora teres f. teres 0-1

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTT_07918	PTT_11603	E3RIP5	E3RRW4	Uncharacterized protein.	Uncharacterized protein.	0.999
PTT_07918	PTT_13326	E3RIP5	E3RVU5	Uncharacterized protein.	Uncharacterized protein.	0.662
PTT_07918	PTT_13990	E3RIP5	E3RX86	Uncharacterized protein.	Uncharacterized protein.	0.804
PTT_11603	PTT_07918	E3RRW4	E3RIP5	Uncharacterized protein.	Uncharacterized protein.	0.999
PTT_11603	PTT_13326	E3RRW4	E3RVU5	Uncharacterized protein.	Uncharacterized protein.	0.989
PTT_11603	PTT_13990	E3RRW4	E3RX86	Uncharacterized protein.	Uncharacterized protein.	0.667
PTT_13326	PTT_07918	E3RVU5	E3RIP5	Uncharacterized protein.	Uncharacterized protein.	0.662
PTT_13326	PTT_11603	E3RVU5	E3RRW4	Uncharacterized protein.	Uncharacterized protein.	0.989
PTT_13326	PTT_13990	E3RVU5	E3RX86	Uncharacterized protein.	Uncharacterized protein.	0.804
PTT_13990	PTT_07918	E3RX86	E3RIP5	Uncharacterized protein.	Uncharacterized protein.	0.804
PTT_13990	PTT_11603	E3RX86	E3RRW4	Uncharacterized protein.	Uncharacterized protein.	0.667
PTT_13990	PTT_13326	E3RX86	E3RVU5	Uncharacterized protein.	Uncharacterized protein.	0.804