(7 nodes) Rough endoplasmic reticulum membrane network (Pyrenophora teres)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTT_08731	Uncharacterized protein. (524 aa)
	PTT_18339	J domain-containing protein. (689 aa)
	PTT_09102	Uncharacterized protein. (201 aa)
	PTT_02280	Uncharacterized protein. (316 aa)
	PTT_10585	Uncharacterized protein. (212 aa)
	PTT_09674	Plug_translocon domain-containing protein. (476 aa)
	PTT_13234	Uncharacterized protein. (69 aa)

Your Current Organism:

Pyrenophora teres

NCBI taxonomy Id: 861557
Other names: P. teres f. teres 0-1, Pyrenophora teres f. teres 0-1

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTT_02280	PTT_09674	E3RDH0	E3RMJ2	Uncharacterized protein.	Plug_translocon domain-containing protein.	0.680
PTT_02280	PTT_13234	E3RDH0	E3RVL7	Uncharacterized protein.	Uncharacterized protein.	0.493
PTT_02280	PTT_18339	E3RDH0	E3S6I0	Uncharacterized protein.	J domain-containing protein.	0.475
PTT_08731	PTT_09102	E3RKH0	E3RL77	Uncharacterized protein.	Uncharacterized protein.	0.902
PTT_08731	PTT_09674	E3RKH0	E3RMJ2	Uncharacterized protein.	Plug_translocon domain-containing protein.	0.998
PTT_08731	PTT_10585	E3RKH0	E3RPK6	Uncharacterized protein.	Uncharacterized protein.	0.897
PTT_08731	PTT_13234	E3RKH0	E3RVL7	Uncharacterized protein.	Uncharacterized protein.	0.998
PTT_08731	PTT_18339	E3RKH0	E3S6I0	Uncharacterized protein.	J domain-containing protein.	0.943
PTT_09102	PTT_08731	E3RL77	E3RKH0	Uncharacterized protein.	Uncharacterized protein.	0.902
PTT_09102	PTT_09674	E3RL77	E3RMJ2	Uncharacterized protein.	Plug_translocon domain-containing protein.	0.946
PTT_09102	PTT_10585	E3RL77	E3RPK6	Uncharacterized protein.	Uncharacterized protein.	0.996
PTT_09102	PTT_13234	E3RL77	E3RVL7	Uncharacterized protein.	Uncharacterized protein.	0.992
PTT_09102	PTT_18339	E3RL77	E3S6I0	Uncharacterized protein.	J domain-containing protein.	0.996
PTT_09674	PTT_02280	E3RMJ2	E3RDH0	Plug_translocon domain-containing protein.	Uncharacterized protein.	0.680
PTT_09674	PTT_08731	E3RMJ2	E3RKH0	Plug_translocon domain-containing protein.	Uncharacterized protein.	0.998
PTT_09674	PTT_09102	E3RMJ2	E3RL77	Plug_translocon domain-containing protein.	Uncharacterized protein.	0.946
PTT_09674	PTT_10585	E3RMJ2	E3RPK6	Plug_translocon domain-containing protein.	Uncharacterized protein.	0.996
PTT_09674	PTT_13234	E3RMJ2	E3RVL7	Plug_translocon domain-containing protein.	Uncharacterized protein.	0.999
PTT_09674	PTT_18339	E3RMJ2	E3S6I0	Plug_translocon domain-containing protein.	J domain-containing protein.	0.979
PTT_10585	PTT_08731	E3RPK6	E3RKH0	Uncharacterized protein.	Uncharacterized protein.	0.897