(22 nodes) Mitotic spindle pole body network (Pyrenophora teres)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTT_06842	Uncharacterized protein. (408 aa)
	PTT_06843	Uncharacterized protein. (467 aa)
	PTT_07027	Uncharacterized protein. (1117 aa)
	PTT_07035	Rab-GAP TBC domain-containing protein. (333 aa)
	PTT_07991	Spindle pole body component. (915 aa)
	PTT_08126	Uncharacterized protein. (882 aa)
	PTT_08171	Uncharacterized protein. (827 aa)
	PTT_08564	Uncharacterized protein. (612 aa)
	PTT_09705	Sod_Cu domain-containing protein. (584 aa)
	PTT_10523	Ima1_N domain-containing protein. (597 aa)
	PTT_11345	Checkpoint protein; Belongs to the HUS1 family. (339 aa)
	PTT_11353	Spindle pole body component. (974 aa)
	PTT_11748	TYR_PHOSPHATASE_2 domain-containing protein. (628 aa)
	PTT_05292	Uncharacterized protein. (661 aa)
	PTT_05731	Uncharacterized protein. (926 aa)
	PTT_12047	Uncharacterized protein. (416 aa)
	PTT_13308	Uncharacterized protein. (388 aa)
	PTT_14223	Uncharacterized protein. (393 aa)
	PTT_15821	Uncharacterized protein. (449 aa)
	PTT_17159	Uncharacterized protein. (1789 aa)
	PTT_17710	DH domain-containing protein. (1538 aa)
	PTT_18381	Peptidase C50 domain-containing protein. (2198 aa)

Your Current Organism:

Pyrenophora teres

NCBI taxonomy Id: 861557
Other names: P. teres f. teres 0-1, Pyrenophora teres f. teres 0-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTT_05731	PTT_07035	E3RF67	E3RGT3	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.914
PTT_05731	PTT_14223	E3RF67	E3RXR4	Uncharacterized protein.	Uncharacterized protein.	0.509
PTT_05731	PTT_17159	E3RF67	E3S3S5	Uncharacterized protein.	Uncharacterized protein.	0.710
PTT_06842	PTT_06843	E3RGC3	E3RGC4	Uncharacterized protein.	Uncharacterized protein.	0.458
PTT_06842	PTT_07035	E3RGC3	E3RGT3	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.482
PTT_06843	PTT_06842	E3RGC4	E3RGC3	Uncharacterized protein.	Uncharacterized protein.	0.458
PTT_06843	PTT_07035	E3RGC4	E3RGT3	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.482
PTT_07035	PTT_05731	E3RGT3	E3RF67	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.914
PTT_07035	PTT_06842	E3RGT3	E3RGC3	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.482
PTT_07035	PTT_06843	E3RGT3	E3RGC4	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.482
PTT_07035	PTT_11748	E3RGT3	E3RS95	Rab-GAP TBC domain-containing protein.	TYR_PHOSPHATASE_2 domain-containing protein.	0.983
PTT_07035	PTT_14223	E3RGT3	E3RXR4	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.624
PTT_07035	PTT_17159	E3RGT3	E3S3S5	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.893
PTT_07991	PTT_11353	E3RIU6	E3RRD0	Spindle pole body component.	Spindle pole body component.	0.999
PTT_09705	PTT_11748	E3RML5	E3RS95	Sod_Cu domain-containing protein.	TYR_PHOSPHATASE_2 domain-containing protein.	0.527
PTT_09705	PTT_14223	E3RML5	E3RXR4	Sod_Cu domain-containing protein.	Uncharacterized protein.	0.476
PTT_09705	PTT_17159	E3RML5	E3S3S5	Sod_Cu domain-containing protein.	Uncharacterized protein.	0.540
PTT_11345	PTT_18381	E3RRC2	E3S6L1	Checkpoint protein; Belongs to the HUS1 family.	Peptidase C50 domain-containing protein.	0.648
PTT_11353	PTT_07991	E3RRD0	E3RIU6	Spindle pole body component.	Spindle pole body component.	0.999
PTT_11353	PTT_12047	E3RRD0	E3RSV9	Spindle pole body component.	Uncharacterized protein.	0.915