5 items (Pyrenophora teres) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTT_11958	G protein gamma domain-containing protein. (97 aa)
	PTT_17426	WD_REPEATS_REGION domain-containing protein. (348 aa)
	PTT_04960	Uncharacterized protein. (351 aa)
	PTT_14626	Uncharacterized protein. (353 aa)
	PTT_19169	Uncharacterized protein. (519 aa)

Your Current Organism:

Pyrenophora teres

NCBI taxonomy Id: 861557
Other names: P. teres f. teres 0-1, Pyrenophora teres f. teres 0-1

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTT_04960	PTT_11958	E3RET3	E3RSP9	Uncharacterized protein.	G protein gamma domain-containing protein.	0.505
PTT_04960	PTT_14626	E3RET3	E3RYK0	Uncharacterized protein.	Uncharacterized protein.	0.902
PTT_04960	PTT_17426	E3RET3	E3S4F0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.909
PTT_11958	PTT_04960	E3RSP9	E3RET3	G protein gamma domain-containing protein.	Uncharacterized protein.	0.505
PTT_11958	PTT_14626	E3RSP9	E3RYK0	G protein gamma domain-containing protein.	Uncharacterized protein.	0.505
PTT_11958	PTT_17426	E3RSP9	E3S4F0	G protein gamma domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.995
PTT_14626	PTT_04960	E3RYK0	E3RET3	Uncharacterized protein.	Uncharacterized protein.	0.902
PTT_14626	PTT_11958	E3RYK0	E3RSP9	Uncharacterized protein.	G protein gamma domain-containing protein.	0.505
PTT_14626	PTT_17426	E3RYK0	E3S4F0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.909
PTT_17426	PTT_04960	E3S4F0	E3RET3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.909
PTT_17426	PTT_11958	E3S4F0	E3RSP9	WD_REPEATS_REGION domain-containing protein.	G protein gamma domain-containing protein.	0.995
PTT_17426	PTT_14626	E3S4F0	E3RYK0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.909