(80 nodes) Large ribosomal subunit network (Pyrenophora teres)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTT_13927	Uncharacterized protein. (127 aa)
	PTT_00364	Fungal_trans domain-containing protein; Belongs to the universal ribosomal protein uL11 family. (927 aa)
	PTT_00414	Uncharacterized protein. (92 aa)
	PTT_01224	Uncharacterized protein. (486 aa)
	PTT_01689	Uncharacterized protein. (331 aa)
	PTT_04845	Uncharacterized protein. (202 aa)
	PTT_05720	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (230 aa)
	PTT_06651	Uncharacterized protein. (108 aa)
	PTT_06943	Uncharacterized protein. (139 aa)
	PTT_07127	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family. (774 aa)
	PTT_07196	Uncharacterized protein. (221 aa)
	PTT_07431	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family. (175 aa)
	PTT_07797	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (141 aa)
	PTT_08481	Uncharacterized protein. (248 aa)
	PTT_08495	RNase III domain-containing protein. (409 aa)
	PTT_09100	Uncharacterized protein. (350 aa)
	PTT_09137	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family. (112 aa)
	PTT_09390	cobW domain-containing protein. (277 aa)
	PTT_09448	Ribosomal_L18_c domain-containing protein. (300 aa)
	PTT_09570	Uncharacterized protein. (265 aa)
	PTT_09617	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family. (174 aa)
	PTT_09630	Uncharacterized protein. (185 aa)
	PTT_09650	Uncharacterized protein. (291 aa)
	PTT_09689	Uncharacterized protein. (159 aa)
	PTT_10057	Uncharacterized protein. (98 aa)
	PTT_10524	Uncharacterized protein. (511 aa)
	PTT_10693	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family. (237 aa)
	PTT_11704	Uncharacterized protein. (140 aa)
	PTT_11882	Uncharacterized protein. (202 aa)
	PTT_12401	Ribos_L4_asso_C domain-containing protein. (371 aa)
	PTT_12594	Uncharacterized protein. (174 aa)
	PTT_12657	Mitoc_mL59 domain-containing protein. (195 aa)
	PTT_12888	Uncharacterized protein. (160 aa)
	PTT_13302	KOW domain-containing protein. (134 aa)
	PTT_13619	Ribosomal_L18e/L15P domain-containing protein. (331 aa)
	PTT_13626	Uncharacterized protein. (455 aa)
	PTT_13627	Uncharacterized protein. (565 aa)
	PTT_13782	Uncharacterized protein. (114 aa)
	PTT_14965	Uncharacterized protein. (94 aa)
	PTT_15099	RNase III domain-containing protein. (269 aa)
	PTT_15111	Uncharacterized protein. (308 aa)
	PTT_15401	L51_S25_CI-B8 domain-containing protein. (138 aa)
	PTT_15774	DCUN1 domain-containing protein. (651 aa)
	PTT_15842	Uncharacterized protein. (160 aa)
	PTT_15978	KOW domain-containing protein. (135 aa)
	PTT_16324	Uncharacterized protein. (359 aa)
	PTT_16333	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (65 aa)
	PTT_16423	Ribosomal_L23eN domain-containing protein. (153 aa)
	PTT_16708	CP-type G domain-containing protein. (673 aa)
	PTT_16973	Ribosomal_L28e domain-containing protein. (150 aa)
	PTT_17149	Ribosomal_L2_C domain-containing protein. (254 aa)
	PTT_17202	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (217 aa)
	PTT_17375	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (315 aa)
	PTT_17684	Uncharacterized protein. (205 aa)
	PTT_17734	Uncharacterized protein. (193 aa)
	PTT_17793	Uncharacterized protein. (51 aa)
	PTT_17948	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family. (148 aa)
	PTT_18176	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (389 aa)
	PTT_18441	Uncharacterized protein. (228 aa)
	PTT_18536	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (133 aa)
	PTT_18630	Ribosomal_L2_C domain-containing protein. (372 aa)
	PTT_18729	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (1261 aa)
	PTT_18787	Ribosomal_L18e/L15P domain-containing protein. (189 aa)
	PTT_18993	L51_S25_CI-B8 domain-containing protein. (174 aa)
	PTT_18995	Ribosomal_L30 domain-containing protein. (121 aa)
	PTT_19422	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (215 aa)
	PTT_19467	Uncharacterized protein. (109 aa)
	PTT_19624	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family. (82 aa)
	PTT_19781	Uncharacterized protein. (175 aa)
	PTT_19811	MRP-L46 domain-containing protein. (372 aa)
	PTT_19910	Uncharacterized protein. (126 aa)
	PTT_19924	Uncharacterized protein. (1066 aa)
	PTT_19974	Ribosomal_L16 domain-containing protein. (221 aa)
	PTT_19975	Ribosomal_L7Ae domain-containing protein. (110 aa)
	PTT_13946	Uncharacterized protein. (221 aa)
	PTT_14215	KOW domain-containing protein. (536 aa)
	PTT_14349	Uncharacterized protein. (514 aa)
	PTT_14366	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family. (254 aa)
	PTT_14563	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (106 aa)
	PTT_14852	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (177 aa)

Your Current Organism:

Pyrenophora teres

NCBI taxonomy Id: 861557
Other names: P. teres f. teres 0-1, Pyrenophora teres f. teres 0-1

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTT_00364	PTT_00414	E3RCE1	E3RCH0	Fungal_trans domain-containing protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein.	0.999
PTT_00364	PTT_01224	E3RCE1	E3RCX2	Fungal_trans domain-containing protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein.	0.979
PTT_00364	PTT_01689	E3RCE1	E3RD66	Fungal_trans domain-containing protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein.	0.942
PTT_00364	PTT_04845	E3RCE1	E3REP1	Fungal_trans domain-containing protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein.	0.999
PTT_00364	PTT_05720	E3RCE1	E3RF66	Fungal_trans domain-containing protein; Belongs to the universal ribosomal protein uL11 family.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999
PTT_00364	PTT_06651	E3RCE1	E3RFX0	Fungal_trans domain-containing protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein.	0.983
PTT_00364	PTT_06943	E3RCE1	E3RGK8	Fungal_trans domain-containing protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein.	0.905
PTT_00364	PTT_07127	E3RCE1	E3RGZ0	Fungal_trans domain-containing protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family.	0.804
PTT_00364	PTT_07431	E3RCE1	E3RHL3	Fungal_trans domain-containing protein; Belongs to the universal ribosomal protein uL11 family.	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999
PTT_00364	PTT_07797	E3RCE1	E3RIE9	Fungal_trans domain-containing protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.999
PTT_00364	PTT_08495	E3RCE1	E3RJX9	Fungal_trans domain-containing protein; Belongs to the universal ribosomal protein uL11 family.	RNase III domain-containing protein.	0.514
PTT_00364	PTT_09100	E3RCE1	E3RL75	Fungal_trans domain-containing protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein.	0.925
PTT_00364	PTT_09137	E3RCE1	E3RLB1	Fungal_trans domain-containing protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.998
PTT_00364	PTT_09448	E3RCE1	E3RM16	Fungal_trans domain-containing protein; Belongs to the universal ribosomal protein uL11 family.	Ribosomal_L18_c domain-containing protein.	0.999
PTT_00364	PTT_09570	E3RCE1	E3RMB0	Fungal_trans domain-containing protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein.	0.856
PTT_00364	PTT_09617	E3RCE1	E3RME5	Fungal_trans domain-containing protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	0.919
PTT_00364	PTT_09630	E3RCE1	E3RMF8	Fungal_trans domain-containing protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein.	0.983
PTT_00364	PTT_09650	E3RCE1	E3RMH5	Fungal_trans domain-containing protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein.	0.982
PTT_00364	PTT_09689	E3RCE1	E3RMK6	Fungal_trans domain-containing protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein.	0.999
PTT_00364	PTT_10057	E3RCE1	E3RNB7	Fungal_trans domain-containing protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein.	0.410