(7 nodes) Aminotransferase class IV network (Pyrenophora teres)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTT_09354	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (418 aa)
	PTT_02580	Uncharacterized protein. (334 aa)
	PTT_19628	Uncharacterized protein. (373 aa)
	PTT_09426	Uncharacterized protein. (418 aa)
	PTT_10816	Uncharacterized protein. (390 aa)
	PTT_11141	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (447 aa)
	PTT_18041	Uncharacterized protein. (350 aa)

Your Current Organism:

Pyrenophora teres

NCBI taxonomy Id: 861557
Other names: P. teres f. teres 0-1, Pyrenophora teres f. teres 0-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTT_09354	PTT_09426	E3RLT7	E3RLZ8	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein.	0.717
PTT_09354	PTT_10816	E3RLT7	E3RQ55	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein.	0.682
PTT_09354	PTT_11141	E3RLT7	E3RQV1	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.715
PTT_09354	PTT_18041	E3RLT7	E3S5T7	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein.	0.689
PTT_09354	PTT_19628	E3RLT7	E3S9C6	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein.	0.675
PTT_09426	PTT_09354	E3RLZ8	E3RLT7	Uncharacterized protein.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.717
PTT_09426	PTT_10816	E3RLZ8	E3RQ55	Uncharacterized protein.	Uncharacterized protein.	0.681
PTT_09426	PTT_11141	E3RLZ8	E3RQV1	Uncharacterized protein.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.616
PTT_09426	PTT_18041	E3RLZ8	E3S5T7	Uncharacterized protein.	Uncharacterized protein.	0.682
PTT_09426	PTT_19628	E3RLZ8	E3S9C6	Uncharacterized protein.	Uncharacterized protein.	0.672
PTT_10816	PTT_09354	E3RQ55	E3RLT7	Uncharacterized protein.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.682
PTT_10816	PTT_09426	E3RQ55	E3RLZ8	Uncharacterized protein.	Uncharacterized protein.	0.681
PTT_10816	PTT_11141	E3RQ55	E3RQV1	Uncharacterized protein.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.676
PTT_10816	PTT_18041	E3RQ55	E3S5T7	Uncharacterized protein.	Uncharacterized protein.	0.632
PTT_10816	PTT_19628	E3RQ55	E3S9C6	Uncharacterized protein.	Uncharacterized protein.	0.621
PTT_11141	PTT_09354	E3RQV1	E3RLT7	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.715
PTT_11141	PTT_09426	E3RQV1	E3RLZ8	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein.	0.616
PTT_11141	PTT_10816	E3RQV1	E3RQ55	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein.	0.676
PTT_11141	PTT_18041	E3RQV1	E3S5T7	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein.	0.677
PTT_11141	PTT_19628	E3RQV1	E3S9C6	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein.	0.669