(7 nodes) Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain network (Pyrenophora teres)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTT_11603	Uncharacterized protein. (509 aa)
	PTT_13990	Uncharacterized protein. (2279 aa)
	PTT_17704	Uncharacterized protein. (1840 aa)
	PTT_00383	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. (1196 aa)
	PTT_09186	Uncharacterized protein. (1244 aa)
	PTT_10529	Uncharacterized protein. (1172 aa)
	PTT_13325	Uncharacterized protein. (657 aa)

Your Current Organism:

Pyrenophora teres

NCBI taxonomy Id: 861557
Other names: P. teres f. teres 0-1, Pyrenophora teres f. teres 0-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTT_00383	PTT_09186	E3RCF8	E3RLE6	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Uncharacterized protein.	0.789
PTT_00383	PTT_11603	E3RCF8	E3RRW4	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Uncharacterized protein.	0.629
PTT_00383	PTT_13990	E3RCF8	E3RX86	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Uncharacterized protein.	0.546
PTT_09186	PTT_00383	E3RLE6	E3RCF8	Uncharacterized protein.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.789
PTT_09186	PTT_10529	E3RLE6	E3RPG6	Uncharacterized protein.	Uncharacterized protein.	0.820
PTT_09186	PTT_13325	E3RLE6	E3RVU4	Uncharacterized protein.	Uncharacterized protein.	0.807
PTT_09186	PTT_13990	E3RLE6	E3RX86	Uncharacterized protein.	Uncharacterized protein.	0.951
PTT_09186	PTT_17704	E3RLE6	E3S528	Uncharacterized protein.	Uncharacterized protein.	0.820
PTT_10529	PTT_09186	E3RPG6	E3RLE6	Uncharacterized protein.	Uncharacterized protein.	0.820
PTT_10529	PTT_13990	E3RPG6	E3RX86	Uncharacterized protein.	Uncharacterized protein.	0.511
PTT_10529	PTT_17704	E3RPG6	E3S528	Uncharacterized protein.	Uncharacterized protein.	0.911
PTT_11603	PTT_00383	E3RRW4	E3RCF8	Uncharacterized protein.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.629
PTT_11603	PTT_13325	E3RRW4	E3RVU4	Uncharacterized protein.	Uncharacterized protein.	0.448
PTT_11603	PTT_13990	E3RRW4	E3RX86	Uncharacterized protein.	Uncharacterized protein.	0.667
PTT_13325	PTT_09186	E3RVU4	E3RLE6	Uncharacterized protein.	Uncharacterized protein.	0.807
PTT_13325	PTT_11603	E3RVU4	E3RRW4	Uncharacterized protein.	Uncharacterized protein.	0.448
PTT_13325	PTT_13990	E3RVU4	E3RX86	Uncharacterized protein.	Uncharacterized protein.	0.471
PTT_13990	PTT_00383	E3RX86	E3RCF8	Uncharacterized protein.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.546
PTT_13990	PTT_09186	E3RX86	E3RLE6	Uncharacterized protein.	Uncharacterized protein.	0.951
PTT_13990	PTT_10529	E3RX86	E3RPG6	Uncharacterized protein.	Uncharacterized protein.	0.511