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vorB vorB oorD oorD lpdA lpdA pckA pckA EFM01325.1 EFM01325.1 mdh mdh frdB frdB nifJ nifJ EFM02062.1 EFM02062.1 porA porA EFM02147.1 EFM02147.1 fumB fumB sdhA sdhA sdhC sdhC fumB2 fumB2 ttdA ttdA porG porG
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
vorBPyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain protein; COG: COG0674; Pfam: PF01855,PF02780; InterPro: IPR002880. (362 aa)
oorD4Fe-4S binding domain protein; Pfam: PF00037. (77 aa)
lpdADihydrolipoyl dehydrogenase; COG: COG1249; Pfam: PF07992,PF00070,PF02852; InterPro: IPR006258. (449 aa)
pckAPhosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. (537 aa)
EFM01325.1Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; COG: COG1013; Pfam: PF02775; InterPro: IPR011766. (256 aa)
mdhLactate/malate dehydrogenase, NAD binding domain protein; COG: COG0039; Pfam: PF00056,PF02866; InterPro: IPR015955; Belongs to the LDH/MDH superfamily. (330 aa)
frdBSuccinate dehydrogenase/fumarate reductase iron-sulfur subunit; InterPro: IPR012675. (253 aa)
nifJPyruvate synthase; COG: COG0674; Pfam: PF01855,PF01558,PF00037,PF02775; InterPro: IPR011895. (1190 aa)
EFM02062.1HMGL-like protein; COG: COG5016; Pfam: PF00682; InterPro: IPR013785. (590 aa)
porA2-oxoacid:acceptor oxidoreductase, alpha subunit; COG: COG0674; Pfam: PF01558,PF01855; InterPro: IPR002880. (616 aa)
EFM02147.1Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; COG: COG1013; Pfam: PF02775; InterPro: IPR011766. (334 aa)
fumBHydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. (549 aa)
sdhASuccinate dehydrogenase or fumarate reductase, flavoprotein subunit; COG: COG1053; Pfam: PF00890,PF02910; InterPro: IPR011280. (648 aa)
sdhCSuccinate dehydrogenase cytochrome B subunit, b558 family; InterPro: IPR011138. (228 aa)
fumB2Hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type; COG: COG1838; Pfam: PF05683; InterPro: IPR004647. (184 aa)
ttdAHydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type; COG: COG1951; Pfam: PF05681; InterPro: IPR004646. (280 aa)
porG2-oxoacid:ferredoxin/flavodoxin oxidoreductase, gamma subunit; COG: COG1014; Pfam: PF01558; InterPro: IPR002869. (188 aa)
Your Current Organism:
Prevotella marshii
NCBI taxonomy Id: 862515
Other names: P. marshii DSM 16973 = JCM 13450, Prevotella marshii DSM 16973, Prevotella marshii DSM 16973 = DSM 16973, Prevotella marshii DSM 16973 = JCM 13450, Prevotella marshii E9.34, Prevotella marshii JCM 13450
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