STRINGSTRING
mmdB mmdB mmdC mmdC EFM02531.1 EFM02531.1 EFM02147.1 EFM02147.1 porA porA nifJ nifJ EFM01606.1 EFM01606.1 frdB frdB sdhA sdhA sdhC sdhC EFM01325.1 EFM01325.1 vorB vorB EFM01200.1 EFM01200.1 mmdC2 mmdC2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
mmdBSodium ion-translocating decarboxylase, beta subunit; COG: COG1883; Pfam: PF03977; InterPro: IPR005661. (385 aa)
mmdCBiotin-requiring enzyme; COG: COG0511; Pfam: PF00364; InterPro: IPR000089. (149 aa)
EFM02531.1Hypothetical protein. (317 aa)
EFM02147.1Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; COG: COG1013; Pfam: PF02775; InterPro: IPR011766. (334 aa)
porA2-oxoacid:acceptor oxidoreductase, alpha subunit; COG: COG0674; Pfam: PF01558,PF01855; InterPro: IPR002880. (616 aa)
nifJPyruvate synthase; COG: COG0674; Pfam: PF01855,PF01558,PF00037,PF02775; InterPro: IPR011895. (1190 aa)
EFM01606.1MaoC-like protein; Pfam: PF01575. (140 aa)
frdBSuccinate dehydrogenase/fumarate reductase iron-sulfur subunit; InterPro: IPR012675. (253 aa)
sdhASuccinate dehydrogenase or fumarate reductase, flavoprotein subunit; COG: COG1053; Pfam: PF00890,PF02910; InterPro: IPR011280. (648 aa)
sdhCSuccinate dehydrogenase cytochrome B subunit, b558 family; InterPro: IPR011138. (228 aa)
EFM01325.1Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; COG: COG1013; Pfam: PF02775; InterPro: IPR011766. (256 aa)
vorBPyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain protein; COG: COG0674; Pfam: PF01855,PF02780; InterPro: IPR002880. (362 aa)
EFM01200.1Hypothetical protein. (450 aa)
mmdC2Biotin-requiring enzyme; COG: COG0511; Pfam: PF00364; InterPro: IPR000089. (144 aa)
Your Current Organism:
Prevotella marshii
NCBI taxonomy Id: 862515
Other names: P. marshii DSM 16973 = JCM 13450, Prevotella marshii DSM 16973, Prevotella marshii DSM 16973 = DSM 16973, Prevotella marshii DSM 16973 = JCM 13450, Prevotella marshii E9.34, Prevotella marshii JCM 13450
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