STRINGSTRING
rpsT rpsT recF recF gyrB gyrB AGK95180.1 AGK95180.1 AGK95198.1 AGK95198.1 AGK95201.1 AGK95201.1 recR recR AGK95226.1 AGK95226.1 AGK95236.1 AGK95236.1 cobB cobB rnmV rnmV topB topB AGK95376.1 AGK95376.1 AGK95384.1 AGK95384.1 rpmE rpmE AGK95490.1 AGK95490.1 AGK95612.1 AGK95612.1 AGK95615.1 AGK95615.1 AGK96006.1 AGK96006.1 AGK96045.1 AGK96045.1 AGK96071.1 AGK96071.1 AGK96236.1 AGK96236.1 AGK96253.1 AGK96253.1 nth nth AGK96273.1 AGK96273.1 AGK96365.1 AGK96365.1 AGK96385.1 AGK96385.1 AGK96601.1 AGK96601.1 AGK96638.1 AGK96638.1 AGK96667.1 AGK96667.1 AGK96851.1 AGK96851.1 AGK96928.1 AGK96928.1 AGK97004.1 AGK97004.1 AGK97031.1 AGK97031.1 rplU rplU rpmA rpmA rpsU rpsU AGK97083.1 AGK97083.1 recO recO dnaG dnaG AGK97121.1 AGK97121.1 AGK97127.1 AGK97127.1 AGK97152.1 AGK97152.1 AGK97233.1 AGK97233.1 AGK97261.1 AGK97261.1 priA priA rpmB rpmB ackA ackA rpmF rpmF smc smc rpsP rpsP AGK97366.1 AGK97366.1 AGK97379.1 AGK97379.1 AGK97401.1 AGK97401.1 topA topA rpsB rpsB AGK97450.1 AGK97450.1 rpsO rpsO AGK97475.1 AGK97475.1 AGK97476.1 AGK97476.1 AGK97498.1 AGK97498.1 AGK97661.1 AGK97661.1 AGK97721.1 AGK97721.1 AGK97724.1 AGK97724.1 AGK97825.1 AGK97825.1 pdxS pdxS AGK97851.1 AGK97851.1 AGK97880.1 AGK97880.1 rplY rplY AGK97899.1 AGK97899.1 AGK97905.1 AGK97905.1 rpmI rpmI AGK97925.1 AGK97925.1 AGK97961.1 AGK97961.1 AGK97987.1 AGK97987.1 AGK98014.1 AGK98014.1 AGK98038.1 AGK98038.1 AGK98046.1 AGK98046.1 AGK98076.1 AGK98076.1 AGK98101.1 AGK98101.1 AGK98184.1 AGK98184.1 AGK98337.1 AGK98337.1 AGK98424.1 AGK98424.1 rplY-2 rplY-2 AGK98537.1 AGK98537.1 AGK98617.1 AGK98617.1 AGK98620.1 AGK98620.1 AGK98640.1 AGK98640.1 dbpA dbpA AGK98828.1 AGK98828.1 AGK98864.1 AGK98864.1 AGK98903.1 AGK98903.1 AGK98965.1 AGK98965.1 AGK99019.1 AGK99019.1 AGK99037.1 AGK99037.1 hpf hpf AGK99102.1 AGK99102.1 AGK99167.1 AGK99167.1 AGK99179.1 AGK99179.1 rpsI rpsI rplM rplM rplQ rplQ rpsK rpsK rpsM rpsM rpmJ rpmJ rplO rplO rpmD rpmD rpsE rpsE rplR rplR rpsH rpsH rpsZ rpsZ rplE rplE rplX rplX rplN rplN rpsQ rpsQ rpmC rpmC rpsC rpsC rpsS rpsS rplB rplB rplW rplW rplC rplC rpsJ rpsJ rpsG rpsG rplL rplL rplJ rplJ rplA rplA rplK rplK rpmG rpmG AGK99261.1 AGK99261.1 AGK99270.1 AGK99270.1 AGK99275.1 AGK99275.1 AGK99429.1 AGK99429.1 AGK99485.1 AGK99485.1 AGK99507.1 AGK99507.1 AGK99508.1 AGK99508.1 AGK99519.1 AGK99519.1 AGK99531.1 AGK99531.1 AGK99555.1 AGK99555.1 rpsR rpsR rpsF rpsF AGK99574.1 AGK99574.1 AGK99575.1 AGK99575.1 AGK99577.1 AGK99577.1 rpmH rpmH
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpsTRibosomal protein S20; Binds directly to 16S ribosomal RNA. (88 aa)
recFrecF protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. (366 aa)
gyrBDNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (636 aa)
AGK95180.1PFAM: Poxvirus D5 protein-like; D5 N terminal like; TIGRFAM: phage/plasmid primase, P4 family, C-terminal domain. (735 aa)
AGK95198.1Hypothetical protein. (69 aa)
AGK95201.1DNA-binding protein, YbaB/EbfC family; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (113 aa)
recRRecombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (199 aa)
AGK95226.1Hypothetical protein. (365 aa)
AGK95236.1Hypothetical protein. (130 aa)
cobBNAD-dependent protein deacetylase, SIR2 family; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily. (241 aa)
rnmVRibonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step. (181 aa)
topBDNA topoisomerase III; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA su [...] (729 aa)
AGK95376.1Putative transcriptional regulator; PFAM: Helix-turn-helix. (139 aa)
AGK95384.1Hypothetical protein. (373 aa)
rpmERibosomal protein L31; Binds the 23S rRNA. (70 aa)
AGK95490.1Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: putative selenium metabolism hydrolase. (394 aa)
AGK95612.1Putative P-loop ATPase; PFAM: Virulence-associated protein E. (806 aa)
AGK95615.1DNA/RNA helicase, superfamily II, SNF2 family; PFAM: SNF2 family N-terminal domain. (456 aa)
AGK96006.1Putative phosphohydrolase; PFAM: Calcineurin-like phosphoesterase. (270 aa)
AGK96045.1PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; Belongs to the ABC transporter superfamily. (326 aa)
AGK96071.1Hypothetical protein; PFAM: FMN-binding domain. (133 aa)
AGK96236.1Adenylate cyclase, class 2 (thermophilic); PFAM: CYTH domain. (179 aa)
AGK96253.1PFAM: FMN-binding domain. (535 aa)
nthEndonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (213 aa)
AGK96273.1Beta-propeller domain-containing protein, methanol dehydrogenase; PFAM: Domain of unknown function (DUF477). (270 aa)
AGK96365.1Putative transcriptional regulator; PFAM: Helix-turn-helix. (68 aa)
AGK96385.1Nuclease-like protein; PFAM: Nuclease-related domain. (249 aa)
AGK96601.1Putative transcriptional regulator; PFAM: Helix-turn-helix. (136 aa)
AGK96638.1DNA replication protein; PFAM: IstB-like ATP binding protein; IstB-like ATP binding N-terminal. (248 aa)
AGK96667.1DNA repair protein; PFAM: Protein of unknown function (DUF2466); TIGRFAM: DNA repair protein radc. (145 aa)
AGK96851.1Isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase. (200 aa)
AGK96928.1PFAM: Protein of unknown function (DUF1703); Predicted AAA-ATPase. (558 aa)
AGK97004.1Hypothetical protein; PFAM: Rubrerythrin. (174 aa)
AGK97031.1DNA repair protein radc; PFAM: Protein of unknown function (DUF2466); TIGRFAM: DNA repair protein radc; Belongs to the UPF0758 family. (228 aa)
rplURibosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (103 aa)
rpmAPFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. (100 aa)
rpsUPFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. (58 aa)
AGK97083.1PFAM: Prokaryotic diacylglycerol kinase; PAP2 superfamily. (232 aa)
recODNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (248 aa)
dnaGDNA primase, catalytic core; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (590 aa)
AGK97121.1DNA/RNA helicase, superfamily II, SNF2 family; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain. (869 aa)
AGK97127.1DNA replication protein; PFAM: IstB-like ATP binding protein. (251 aa)
AGK97152.1PFAM: ATPase family associated with various cellular activities (AAA). (373 aa)
AGK97233.1Hypothetical protein. (214 aa)
AGK97261.1PFAM: MgsA AAA+ ATPase C terminal; Holliday junction DNA helicase ruvB N-terminus. (433 aa)
priAPrimosomal protein N'; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (733 aa)
rpmBPFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (63 aa)
ackAAcetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (399 aa)
rpmFPFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. (60 aa)
smcChromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1185 aa)
rpsPPFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (81 aa)
AGK97366.1Putative transcriptional regulator; PFAM: Helix-turn-helix. (144 aa)
AGK97379.1PFAM: Bacterial dnaA protein; Belongs to the DnaA family. (255 aa)
AGK97401.1Hypothetical protein. (60 aa)
topADNA topoisomerase I, bacterial; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removi [...] (694 aa)
rpsBPFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type; Belongs to the universal ribosomal protein uS2 family. (233 aa)
AGK97450.1PFAM: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family. (103 aa)
rpsORibosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (87 aa)
AGK97475.1DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase. (367 aa)
AGK97476.1ATP-dependent DNA helicase RecQ; PFAM: Helicase conserved C-terminal domain; RQC domain; HRDC domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family. (722 aa)
AGK97498.1DNA/RNA helicase, superfamily II, SNF2 family; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain. (576 aa)
AGK97661.1DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (568 aa)
AGK97721.1Sporulation protein, yteA family; PFAM: Prokaryotic dksA/traR C4-type zinc finger; TIGRFAM: sporulation protein, yteA family; RNA polymerase-binding protein DksA. (203 aa)
AGK97724.1Hypothetical protein. (256 aa)
AGK97825.1Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit; PFAM: Toprim domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus. (651 aa)
pdxSPyridoxal 5''-phosphate synthase, synthase subunit Pdx1; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. (289 aa)
AGK97851.1Methenyl tetrahydrofolate cyclohydrolase; PFAM: Formiminotransferase-cyclodeaminase. (213 aa)
AGK97880.1PFAM: Tetratricopeptide repeat. (356 aa)
rplYRibosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (207 aa)
AGK97899.1PFAM: NAD dependent epimerase/dehydratase family. (317 aa)
AGK97905.1DNA replication protein; PFAM: IstB-like ATP binding protein. (251 aa)
rpmIPFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. (65 aa)
AGK97925.1PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; Belongs to the ABC transporter superfamily. (335 aa)
AGK97961.1DNA primase; PFAM: CHC2 zinc finger; FtsK/SpoIIIE family. (858 aa)
AGK97987.1DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase; Belongs to the DEAD box helicase family. (522 aa)
AGK98014.1Isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase. (200 aa)
AGK98038.1Isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats). (167 aa)
AGK98046.1Hypothetical protein; PFAM: FMN-binding domain. (133 aa)
AGK98076.1Putative phosphohydrolase; PFAM: Calcineurin-like phosphoesterase. (392 aa)
AGK98101.1PFAM: Rubrerythrin. (186 aa)
AGK98184.1DNA primase; PFAM: CHC2 zinc finger. (858 aa)
AGK98337.1PFAM: Helix-turn-helix. (223 aa)
AGK98424.1PFAM: RyR domain. (860 aa)
rplY-2Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (198 aa)
AGK98537.1PFAM: Class II Aldolase and Adducin N-terminal domain; TIGRFAM: L-ribulose-5-phosphate 4-epimerase. (220 aa)
AGK98617.1DNA replication protein; PFAM: IstB-like ATP binding protein. (251 aa)
AGK98620.1PFAM: Protein of unknown function (DUF1703); Predicted AAA-ATPase. (593 aa)
AGK98640.1DNA/RNA helicase, superfamily II, SNF2 family; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain; Bacterial SNF2 helicase associated; SWIM zinc finger. (1078 aa)
dbpADNA/RNA helicase, superfamily II; DEAD-box RNA helicase involved in the assembly of the 50S ribosomal subunit. Has an RNA-dependent ATPase activity, which is specific for 23S rRNA, and a 3' to 5' RNA helicase activity that uses the energy of ATP hydrolysis to destabilize and unwind short rRNA duplexes. (479 aa)
AGK98828.1DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase. (380 aa)
AGK98864.1PFAM: ATPase family associated with various cellular activities (AAA). (308 aa)
AGK98903.1PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; Belongs to the ABC transporter superfamily. (329 aa)
AGK98965.1PFAM: FMN-binding domain. (391 aa)
AGK99019.1DNA primase; PFAM: FtsK/SpoIIIE family; CHC2 zinc finger. (868 aa)
AGK99037.1Putative transcriptional regulator; PFAM: Helix-turn-helix. (112 aa)
hpfRibosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (178 aa)
AGK99102.1PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region. (162 aa)
AGK99167.1PFAM: Thioredoxin; TIGRFAM: thioredoxin; Belongs to the thioredoxin family. (103 aa)
AGK99179.1Hypothetical protein. (238 aa)
rpsIPFAM: Ribosomal protein S9/S16; Belongs to the universal ribosomal protein uS9 family. (130 aa)
rplMRibosomal protein L13, bacterial type; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (144 aa)
rplQPFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17. (113 aa)
rpsK30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (131 aa)
rpsM30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. (123 aa)
rpmJPFAM: Ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type; Belongs to the bacterial ribosomal protein bL36 family. (37 aa)
rplORibosomal protein L15, bacterial/organelle; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (146 aa)
rpmDPFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle. (59 aa)
rpsERibosomal protein S5, bacterial/organelle type; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (165 aa)
rplRRibosomal protein L18, bacterial type; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (120 aa)
rpsHRibosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (132 aa)
rpsZRibosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. (61 aa)
rplERibosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (180 aa)
rplXRibosomal protein L24, bacterial/organelle; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. (107 aa)
rplNRibosomal protein L14, bacterial/organelle; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa)
rpsQ30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (84 aa)
rpmCPFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. (67 aa)
rpsCRibosomal protein S3, bacterial type; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (222 aa)
rpsSRibosomal protein S19, bacterial/organelle; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (94 aa)
rplBRibosomal protein L2, bacterial/organellar; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (277 aa)
rplWRibosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (98 aa)
rplC50S ribosomal protein L3, bacterial; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (209 aa)
rpsJRibosomal protein S10, bacterial/organelle; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (102 aa)
rpsGRibosomal protein S7, bacterial/organelle; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa)
rplLRibosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (122 aa)
rplJRibosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (170 aa)
rplARibosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (229 aa)
rplK50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (141 aa)
rpmGPFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type; Belongs to the bacterial ribosomal protein bL33 family. (49 aa)
AGK99261.1Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (323 aa)
AGK99270.1Putative RNA-binding protein with ribosomal protein S1 domain; PFAM: S1 RNA binding domain. (135 aa)
AGK99275.1PFAM: Bacterial DNA-binding protein; Belongs to the bacterial histone-like protein family. (91 aa)
AGK99429.1DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; Belongs to the DEAD box helicase family. (418 aa)
AGK99485.1Topoisomerase IA; PFAM: Toprim domain; DNA topoisomerase; TIGRFAM: DNA topoisomerase III, bacteria and conjugative plasmid. (719 aa)
AGK99507.1DnaD-like protein; PFAM: Replication initiation and membrane attachment protein (DnaB); TIGRFAM: DnaD and phage-associated domain. (326 aa)
AGK99508.1DNA replication protein; PFAM: IstB-like ATP binding protein. (327 aa)
AGK99519.1PFAM: ATPase family associated with various cellular activities (AAA). (381 aa)
AGK99531.1PFAM: Rubrerythrin. (170 aa)
AGK99555.1Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (443 aa)
rpsRRibosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (94 aa)
rpsFRibosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (95 aa)
AGK99574.1Hypothetical protein. (166 aa)
AGK99575.1ParB-like partition protein; PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins; Belongs to the ParB family. (288 aa)
AGK99577.1ParB-like partition protein; PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins; Belongs to the ParB family. (277 aa)
rpmHPFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type; IMG reference gene:2509566933_SP; Belongs to the bacterial ribosomal protein bL34 family. (44 aa)
Your Current Organism:
Clostridium pasteurianum
NCBI taxonomy Id: 86416
Other names: C. pasteurianum BC1, Clostridia isolate BC1, Clostridium pasteurianum BC1, Clostridium pasteurianum str. BC1, Clostridium pasteurianum strain BC1, Clostridium sp. ATCC 53464, Clostridium sp. BC1
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