(41 nodes) Mismatch repair network (Notechis scutatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MSH2	mutS homolog 2. (920 aa)
	RFC1	Replication factor C subunit 1. (1166 aa)
	ENSNSUP00000020449	annotation not available (124 aa)
	MLH1	mutL homolog 1. (232 aa)
	PCNA	Proliferating cell nuclear antigen. (261 aa)
	RPA3	Replication protein A3. (119 aa)
	PMS1	PMS1 homolog 1, mismatch repair system component. (832 aa)
	MEIOB	Meiosis specific with OB-fold. (432 aa)
	SSBP1	Single stranded DNA binding protein 1. (149 aa)
	RPA2	Replication protein A2. (268 aa)
	PPIL3	Peptidylprolyl isomerase like 3. (161 aa)
	RFC3	Replication factor C subunit 3. (356 aa)
	LIG1	DNA ligase 1. (706 aa)
	LOC113429107	DNA polymerase delta subunit 3-like. (231 aa)
	LOC113429101	DNA polymerase delta subunit 3-like. (231 aa)
	LOC113429086	DNA polymerase delta subunit 3-like. (231 aa)
	ISG20	Apoptosis-enhancing nuclease-like. (206 aa)
	REXO4	REX4 homolog, 3'-5' exonuclease. (412 aa)
	PRKRIP1	PRKR interacting protein 1. (161 aa)
	RFC2	Replication factor C subunit 2. (355 aa)
	YJU2	YJU2 splicing factor homolog. (310 aa)
	MSH4	mutS homolog 4. (795 aa)
	POLD4	DNA polymerase delta 4, accessory subunit. (106 aa)
	ISG20L2	Interferon stimulated exonuclease gene 20 like 2. (348 aa)
	SASS6	SAS-6 centriolar assembly protein. (581 aa)
	CABP5	Calcium binding protein 5. (156 aa)
	STN1	STN1 subunit of CST complex. (377 aa)
	MSH5	mutS homolog 5. (813 aa)
	POLD1	DNA polymerase delta 1, catalytic subunit. (1133 aa)
	MSH3	mutS homolog 3. (1024 aa)
	RAD17	RAD17 checkpoint clamp loader component. (680 aa)
	POLD2	DNA polymerase delta 2, accessory subunit. (428 aa)
	MLH3	mutL homolog 3. (1406 aa)
	ATAD5	ATPase family AAA domain containing 5. (1674 aa)
	ENSNSUP00000000213	annotation not available (261 aa)
	ENSNSUP00000000146	annotation not available (191 aa)
	B2M	Beta-2-microglobulin. (121 aa)
	RFC5	Replication factor C subunit 5. (315 aa)
	RFC4	Replication factor C subunit 4. (336 aa)
	EXO1	Exonuclease 1. (795 aa)
	MSH6	mutS homolog 6. (1289 aa)

Your Current Organism:

Notechis scutatus

NCBI taxonomy Id: 8663
Other names: N. scutatus, Naja (Hamadryas) scutata, ZMB 2815, common tiger snake, mainland tiger snake

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATAD5	B2M	ENSNSUP00000002138	ENSNSUP00000027223	ATPase family AAA domain containing 5.	Beta-2-microglobulin.	0.743
ATAD5	ENSNSUP00000020449	ENSNSUP00000002138	ENSNSUP00000020449	ATPase family AAA domain containing 5.	annotation not available	0.408
ATAD5	EXO1	ENSNSUP00000002138	ENSNSUP00000023306	ATPase family AAA domain containing 5.	Exonuclease 1.	0.971
ATAD5	LIG1	ENSNSUP00000002138	ENSNSUP00000016499	ATPase family AAA domain containing 5.	DNA ligase 1.	0.876
ATAD5	LOC113429086	ENSNSUP00000002138	ENSNSUP00000015498	ATPase family AAA domain containing 5.	DNA polymerase delta subunit 3-like.	0.725
ATAD5	LOC113429101	ENSNSUP00000002138	ENSNSUP00000015517	ATPase family AAA domain containing 5.	DNA polymerase delta subunit 3-like.	0.725
ATAD5	LOC113429107	ENSNSUP00000002138	ENSNSUP00000015523	ATPase family AAA domain containing 5.	DNA polymerase delta subunit 3-like.	0.725
ATAD5	MEIOB	ENSNSUP00000002138	ENSNSUP00000018852	ATPase family AAA domain containing 5.	Meiosis specific with OB-fold.	0.912
ATAD5	MLH1	ENSNSUP00000002138	ENSNSUP00000020448	ATPase family AAA domain containing 5.	mutL homolog 1.	0.408
ATAD5	MSH2	ENSNSUP00000002138	ENSNSUP00000022526	ATPase family AAA domain containing 5.	mutS homolog 2.	0.539
ATAD5	MSH3	ENSNSUP00000002138	ENSNSUP00000005796	ATPase family AAA domain containing 5.	mutS homolog 3.	0.474
ATAD5	MSH6	ENSNSUP00000002138	ENSNSUP00000022538	ATPase family AAA domain containing 5.	mutS homolog 6.	0.572
ATAD5	PCNA	ENSNSUP00000002138	ENSNSUP00000019859	ATPase family AAA domain containing 5.	Proliferating cell nuclear antigen.	0.991
ATAD5	POLD1	ENSNSUP00000002138	ENSNSUP00000006325	ATPase family AAA domain containing 5.	DNA polymerase delta 1, catalytic subunit.	0.867
ATAD5	POLD2	ENSNSUP00000002138	ENSNSUP00000004279	ATPase family AAA domain containing 5.	DNA polymerase delta 2, accessory subunit.	0.816
ATAD5	POLD4	ENSNSUP00000002138	ENSNSUP00000009489	ATPase family AAA domain containing 5.	DNA polymerase delta 4, accessory subunit.	0.532
ATAD5	RAD17	ENSNSUP00000002138	ENSNSUP00000005781	ATPase family AAA domain containing 5.	RAD17 checkpoint clamp loader component.	0.973
ATAD5	RFC1	ENSNSUP00000002138	ENSNSUP00000022152	ATPase family AAA domain containing 5.	Replication factor C subunit 1.	0.973
ATAD5	RFC2	ENSNSUP00000002138	ENSNSUP00000010558	ATPase family AAA domain containing 5.	Replication factor C subunit 2.	0.998
ATAD5	RFC3	ENSNSUP00000002138	ENSNSUP00000017446	ATPase family AAA domain containing 5.	Replication factor C subunit 3.	0.999