(35 nodes) Circadian rhythm - plant, and Tricarboxylate secondary active transmembrane transporter activity network (Rhizopus azygosporus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CU097_001658	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (156 aa)
	CU097_001919	Cir_N domain-containing protein. (235 aa)
	CU097_000560	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (139 aa)
	CU097_004897	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (303 aa)
	CU097_005372	BTB domain-containing protein. (683 aa)
	CU097_007583	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (153 aa)
	CU097_004022	Uncharacterized protein. (512 aa)
	CU097_003964	BTB domain-containing protein. (760 aa)
	AAC3_1	ADP/ATP carrier protein aac3; Belongs to the mitochondrial carrier (TC 2.A.29) family. (79 aa)
	CU097_001294	Uncharacterized protein. (539 aa)
	CU097_007823	Uncharacterized protein. (475 aa)
	AAC3_2	ADP/ATP carrier protein aac3; Belongs to the mitochondrial carrier (TC 2.A.29) family. (305 aa)
	KLHDC1	Kelch domain-containing protein 1. (515 aa)
	CU097_013365	Uncharacterized protein. (370 aa)
	CU097_004489	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (305 aa)
	CU097_009319	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (999 aa)
	CU097_002607	Uncharacterized protein. (554 aa)
	CU097_013040	Uncharacterized protein. (95 aa)
	CU097_006303	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (318 aa)
	CU097_013392	Uncharacterized protein. (472 aa)
	CU097_004900	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (303 aa)
	KLHDC2	Kelch domain-containing protein 2. (883 aa)
	CU097_008448	Uncharacterized protein. (474 aa)
	CYP6_2	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (176 aa)
	CU097_013526	Uncharacterized protein. (144 aa)
	CU097_012992	Uncharacterized protein. (498 aa)
	CU097_011706	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (236 aa)
	CU097_014822	Uncharacterized protein. (119 aa)
	CU097_002481	Uncharacterized protein. (515 aa)
	SFC1	Mitochondrial succinate-fumarate transporter; Belongs to the mitochondrial carrier (TC 2.A.29) family. (197 aa)
	CU097_010700	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (90 aa)
	CU097_015347	Uncharacterized protein. (460 aa)
	CU097_001392	Uncharacterized protein. (506 aa)
	CU097_014330	BTB domain-containing protein. (651 aa)
	CU097_011643	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (323 aa)

Your Current Organism:

Rhizopus azygosporus

NCBI taxonomy Id: 86630
Other names: ATCC 48108, CBS 357.93, R. azygosporus, Rhizopus microsporus var. azygosporus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AAC3_1	CU097_001294	A0A367JHJ1	A0A367JK64	ADP/ATP carrier protein aac3; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein.	0.412
AAC3_1	CU097_001392	A0A367JHJ1	A0A367KCA9	ADP/ATP carrier protein aac3; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein.	0.412
AAC3_1	CU097_001658	A0A367JHJ1	A0A367IL33	ADP/ATP carrier protein aac3; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.920
AAC3_1	CU097_001919	A0A367JHJ1	A0A367IPN0	ADP/ATP carrier protein aac3; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Cir_N domain-containing protein.	0.855
AAC3_1	CU097_002481	A0A367JHJ1	A0A367K974	ADP/ATP carrier protein aac3; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein.	0.412
AAC3_1	CU097_002607	A0A367JHJ1	A0A367JVD6	ADP/ATP carrier protein aac3; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein.	0.412
AAC3_1	CU097_003964	A0A367JHJ1	A0A367JC19	ADP/ATP carrier protein aac3; Belongs to the mitochondrial carrier (TC 2.A.29) family.	BTB domain-containing protein.	0.412
AAC3_1	CU097_004022	A0A367JHJ1	A0A367J980	ADP/ATP carrier protein aac3; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein.	0.412
AAC3_1	CU097_004489	A0A367JHJ1	A0A367JUD1	ADP/ATP carrier protein aac3; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.496
AAC3_1	CU097_004897	A0A367JHJ1	A0A367IXP7	ADP/ATP carrier protein aac3; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.496
AAC3_1	CU097_004900	A0A367JHJ1	A0A367JYL4	ADP/ATP carrier protein aac3; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.496
AAC3_1	CU097_005372	A0A367JHJ1	A0A367IZD7	ADP/ATP carrier protein aac3; Belongs to the mitochondrial carrier (TC 2.A.29) family.	BTB domain-containing protein.	0.412
AAC3_1	CU097_006303	A0A367JHJ1	A0A367JXX2	ADP/ATP carrier protein aac3; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.480
AAC3_1	CU097_007583	A0A367JHJ1	A0A367IZM5	ADP/ATP carrier protein aac3; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.636
AAC3_1	CU097_007823	A0A367JHJ1	A0A367JML8	ADP/ATP carrier protein aac3; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein.	0.412
AAC3_1	CU097_008448	A0A367JHJ1	A0A367K268	ADP/ATP carrier protein aac3; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein.	0.412
AAC3_1	CU097_009319	A0A367JHJ1	A0A367JVA4	ADP/ATP carrier protein aac3; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.412
AAC3_1	CU097_010700	A0A367JHJ1	A0A367KC03	ADP/ATP carrier protein aac3; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.480
AAC3_1	CU097_011643	A0A367JHJ1	A0A367KFA6	ADP/ATP carrier protein aac3; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.480
AAC3_1	CU097_011706	A0A367JHJ1	A0A367K760	ADP/ATP carrier protein aac3; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.480