(28 nodes) 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily network (Rhizopus azygosporus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GPD1_1	Glycerol-3-phosphate dehydrogenase [NAD(+)]. (355 aa)
	CU097_003027	3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family. (311 aa)
	CU097_008663	Uncharacterized protein. (310 aa)
	CU097_008202	2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid. (323 aa)
	GPD1_2	Glycerol-3-phosphate dehydrogenase [NAD(+)]. (345 aa)
	6PGD_4	6-phosphogluconate dehydrogenase, decarboxylating. (225 aa)
	PAN5_2	2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid. (317 aa)
	CU097_013740	Uncharacterized protein. (307 aa)
	ILV5_1	Bifunctional acetohydroxyacid reductoisomerase; Belongs to the ketol-acid reductoisomerase family. (394 aa)
	GPD1L_1	Glycerol-3-phosphate dehydrogenase [NAD(+)]. (343 aa)
	CU097_002872	Uncharacterized protein. (384 aa)
	UGD1_2	UDP-glucose 6-dehydrogenase. (472 aa)
	6PGD_2	6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. (485 aa)
	CU097_008019	Uncharacterized protein. (307 aa)
	GPD1_6	Glycerol-3-phosphate dehydrogenase [NAD(+)]. (355 aa)
	CU097_004735	Pyrroline-5-carboxylate reductase; Belongs to the pyrroline-5-carboxylate reductase family. (280 aa)
	6PGD_3	6-phosphogluconate dehydrogenase, decarboxylating; Belongs to the 6-phosphogluconate dehydrogenase family. (654 aa)
	CU097_005666	Uncharacterized protein. (310 aa)
	CU097_012162	Uncharacterized protein. (316 aa)
	ILV5_2	Bifunctional acetohydroxyacid reductoisomerase; Belongs to the ketol-acid reductoisomerase family. (394 aa)
	GPD1L_2	Glycerol-3-phosphate dehydrogenase [NAD(+)]. (343 aa)
	TYR1_1	Prephenate dehydrogenase [NADP(+)]; Belongs to the prephenate/arogenate dehydrogenase family. (434 aa)
	UGD1_1	UDP-glucose 6-dehydrogenase. (472 aa)
	CU097_006054	Pyrroline-5-carboxylate reductase; Belongs to the pyrroline-5-carboxylate reductase family. (299 aa)
	CU097_007317	Pyrroline-5-carboxylate reductase; Belongs to the pyrroline-5-carboxylate reductase family. (299 aa)
	PAN5_1	2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid. (317 aa)
	TYR1_2	Prephenate dehydrogenase [NADP(+)]; Belongs to the prephenate/arogenate dehydrogenase family. (434 aa)
	CU097_003215	Pyrroline-5-carboxylate reductase; Belongs to the pyrroline-5-carboxylate reductase family. (280 aa)

Your Current Organism:

Rhizopus azygosporus

NCBI taxonomy Id: 86630
Other names: ATCC 48108, CBS 357.93, R. azygosporus, Rhizopus microsporus var. azygosporus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CU097_003027	CU097_005666	A0A367JA18	A0A367JUZ9	3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.	Uncharacterized protein.	0.757
CU097_003027	CU097_008019	A0A367JA18	A0A367K908	3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.	Uncharacterized protein.	0.775
CU097_003027	CU097_008663	A0A367JA18	A0A367J875	3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.	Uncharacterized protein.	0.757
CU097_003027	CU097_012162	A0A367JA18	A0A367JTD7	3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.	Uncharacterized protein.	0.757
CU097_003027	CU097_013740	A0A367JA18	A0A367JVH5	3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.	Uncharacterized protein.	0.774
CU097_003215	PAN5_1	A0A367JCB8	A0A367K732	Pyrroline-5-carboxylate reductase; Belongs to the pyrroline-5-carboxylate reductase family.	2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.	0.511
CU097_003215	PAN5_2	A0A367JCB8	A0A367JYN2	Pyrroline-5-carboxylate reductase; Belongs to the pyrroline-5-carboxylate reductase family.	2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.	0.511
CU097_004735	PAN5_1	A0A367JG70	A0A367K732	Pyrroline-5-carboxylate reductase; Belongs to the pyrroline-5-carboxylate reductase family.	2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.	0.511
CU097_004735	PAN5_2	A0A367JG70	A0A367JYN2	Pyrroline-5-carboxylate reductase; Belongs to the pyrroline-5-carboxylate reductase family.	2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.	0.511
CU097_005666	CU097_003027	A0A367JUZ9	A0A367JA18	Uncharacterized protein.	3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.	0.757
CU097_005666	CU097_008019	A0A367JUZ9	A0A367K908	Uncharacterized protein.	Uncharacterized protein.	0.632
CU097_005666	CU097_013740	A0A367JUZ9	A0A367JVH5	Uncharacterized protein.	Uncharacterized protein.	0.632
CU097_006054	PAN5_1	A0A367JF52	A0A367K732	Pyrroline-5-carboxylate reductase; Belongs to the pyrroline-5-carboxylate reductase family.	2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.	0.511
CU097_006054	PAN5_2	A0A367JF52	A0A367JYN2	Pyrroline-5-carboxylate reductase; Belongs to the pyrroline-5-carboxylate reductase family.	2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.	0.511
CU097_007317	PAN5_1	A0A367J1Y6	A0A367K732	Pyrroline-5-carboxylate reductase; Belongs to the pyrroline-5-carboxylate reductase family.	2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.	0.511
CU097_007317	PAN5_2	A0A367J1Y6	A0A367JYN2	Pyrroline-5-carboxylate reductase; Belongs to the pyrroline-5-carboxylate reductase family.	2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.	0.511
CU097_008019	CU097_003027	A0A367K908	A0A367JA18	Uncharacterized protein.	3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.	0.775
CU097_008019	CU097_005666	A0A367K908	A0A367JUZ9	Uncharacterized protein.	Uncharacterized protein.	0.632
CU097_008019	CU097_008663	A0A367K908	A0A367J875	Uncharacterized protein.	Uncharacterized protein.	0.632
CU097_008019	CU097_012162	A0A367K908	A0A367JTD7	Uncharacterized protein.	Uncharacterized protein.	0.632