STRINGSTRING
eif6 eif6 MTCT_0482 MTCT_0482 MTCT_0577 MTCT_0577 MTCT_0608 MTCT_0608 MTCT_0614 MTCT_0614 MTCT_0771 MTCT_0771 MTCT_0914 MTCT_0914 flpA flpA rsmA rsmA MTCT_1476 MTCT_1476 MTCT_1615 MTCT_1615 rlmE rlmE MTCT_1700 MTCT_1700
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
eif6Translation initiation factor IF-6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex. (222 aa)
MTCT_0482Conserved hypothetical protein; Probable pre-rRNA processing protein involved in ribosome biogenesis; Belongs to the TSR3 family. (169 aa)
MTCT_0577Conserved hypothetical protein. (160 aa)
MTCT_0608Conserved hypothetical protein; Probably involved in the biogenesis of the ribosome. (155 aa)
MTCT_0614Conserved hypothetical protein. (232 aa)
MTCT_0771GTP-binding protein. (343 aa)
MTCT_0914Conserved hypothetical protein. (188 aa)
flpAFibrillarin; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. (224 aa)
rsmADimethyladenosine transferase; Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily. (273 aa)
MTCT_1476Conserved hypothetical protein. (61 aa)
MTCT_1615Conserved hypothetical protein. (351 aa)
rlmERibosomal RNA methyltransferase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. (211 aa)
MTCT_1700Conserved hypothetical protein. (165 aa)
Your Current Organism:
Methanothermobacter sp. CaT2
NCBI taxonomy Id: 866790
Other names: M. sp. CaT2
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