11 items (Theileria orientalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TOT_010000847	Uncharacterized protein. (671 aa)
	TOT_040000506	Uncharacterized protein. (760 aa)
	TOT_020001105	Uncharacterized protein. (764 aa)
	TOT_030000421	DEAD-box family RNA helicase. (571 aa)
	TOT_040000342	S1 motif domain-containing protein. (1243 aa)
	TOT_010000776	RNA helicase. (650 aa)
	TOT_020000911	CBF domain-containing protein. (797 aa)
	TOT_030000458	NUC173 domain-containing protein. (1542 aa)
	TOT_020000700	Uncharacterized protein. (635 aa)
	TOT_010001212	ATP-dependent RNA helicase. (578 aa)
	TOT_040000766	Pumilio RNA-binding region repeat containing protein. (539 aa)

Your Current Organism:

Theileria orientalis

NCBI taxonomy Id: 869250
Other names: T. orientalis strain Shintoku, Theileria orientalis strain Shintoku

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TOT_010000776	TOT_010000847	J4CCF8	J4C2W3	RNA helicase.	Uncharacterized protein.	0.877
TOT_010000776	TOT_010001212	J4CCF8	J7MEN6	RNA helicase.	ATP-dependent RNA helicase.	0.903
TOT_010000776	TOT_020000700	J4CCF8	J4DPC1	RNA helicase.	Uncharacterized protein.	0.874
TOT_010000776	TOT_020000911	J4CCF8	J4CD76	RNA helicase.	CBF domain-containing protein.	0.796
TOT_010000776	TOT_020001105	J4CCF8	J4C8F7	RNA helicase.	Uncharacterized protein.	0.712
TOT_010000776	TOT_030000421	J4CCF8	J4C8P7	RNA helicase.	DEAD-box family RNA helicase.	0.883
TOT_010000776	TOT_030000458	J4CCF8	J4D952	RNA helicase.	NUC173 domain-containing protein.	0.650
TOT_010000776	TOT_040000342	J4CCF8	J4C958	RNA helicase.	S1 motif domain-containing protein.	0.598
TOT_010000776	TOT_040000506	J4CCF8	J4C4G3	RNA helicase.	Uncharacterized protein.	0.866
TOT_010000776	TOT_040000766	J4CCF8	J7MF32	RNA helicase.	Pumilio RNA-binding region repeat containing protein.	0.665
TOT_010000847	TOT_010000776	J4C2W3	J4CCF8	Uncharacterized protein.	RNA helicase.	0.877
TOT_010000847	TOT_010001212	J4C2W3	J7MEN6	Uncharacterized protein.	ATP-dependent RNA helicase.	0.922
TOT_010000847	TOT_020000700	J4C2W3	J4DPC1	Uncharacterized protein.	Uncharacterized protein.	0.913
TOT_010000847	TOT_020000911	J4C2W3	J4CD76	Uncharacterized protein.	CBF domain-containing protein.	0.998
TOT_010000847	TOT_020001105	J4C2W3	J4C8F7	Uncharacterized protein.	Uncharacterized protein.	0.951
TOT_010000847	TOT_030000421	J4C2W3	J4C8P7	Uncharacterized protein.	DEAD-box family RNA helicase.	0.921
TOT_010000847	TOT_030000458	J4C2W3	J4D952	Uncharacterized protein.	NUC173 domain-containing protein.	0.960
TOT_010000847	TOT_040000342	J4C2W3	J4C958	Uncharacterized protein.	S1 motif domain-containing protein.	0.922
TOT_010000847	TOT_040000506	J4C2W3	J4C4G3	Uncharacterized protein.	Uncharacterized protein.	0.846
TOT_010000847	TOT_040000766	J4C2W3	J7MF32	Uncharacterized protein.	Pumilio RNA-binding region repeat containing protein.	0.782